Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20100
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 136 9e-33
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 124 4e-29
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 97 6e-21
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 63 2e-10
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 50 1e-06
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 4e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.63
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 30 1.4
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 30 1.4
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 1.9
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 3.3
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 5.8
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 28 5.8
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 27 7.7
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 136 bits (330), Expect = 9e-33
Identities = 78/162 (48%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = +2
Query: 71 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 250
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 251 MTP-TTQYSMPNVSSDVSSKMLLCKPT*STGLSRLTVMRQT*DQGSI*G*RQNLFPRGSQ 427
M P T + + ++ + + + Q G +++ FP
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 428 FHGAYENEGNCRSLSWQNCAECSYHGSAFFNDSQRQATKDAG 553
+ + + + A+F+DSQRQATKDAG
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAG 162
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +3
Query: 366 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
+PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +AV+TVP
Sbjct: 100 RPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 253 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVDSDEANLRSR*HIRVKTKPFSPRK 423
+P NT+FDAKRLIGRKF+D V DM HWPF V + + + + + K F P +
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEE 118
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 130 bits (313), Expect = 1e-30
Identities = 59/64 (92%), Positives = 61/64 (95%)
Frame = +2
Query: 71 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 250
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 251 MTPT 262
M PT
Sbjct: 61 MNPT 64
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +3
Query: 363 GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
G+PK+KV YKGE KTFF EE+SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 124 GRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +1
Query: 253 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVDSDEANLRSR*HIRVKTKPF 411
+P NTIFDAKRLIGR+F+D V+ DMKHW FEV ++ + + + +TK F
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTF 114
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 420 EVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
++SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 509 AFFNDSQRQATKDAG 553
A+FNDSQRQATKDAG
Sbjct: 173 AYFNDSQRQATKDAG 187
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 509 AFFNDSQRQATKDAG 553
A+FNDSQRQATKDAG
Sbjct: 241 AYFNDSQRQATKDAG 255
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 124 bits (300), Expect = 4e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +2
Query: 71 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 250
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 251 MTP 259
+ P
Sbjct: 61 LNP 63
Score = 75.8 bits (178), Expect = 2e-14
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +3
Query: 366 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
KPKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+ V +AVITVP
Sbjct: 100 KPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 64.1 bits (149), Expect = 7e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = +1
Query: 253 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVDSDEANLRSR*HIRVKTKPFS 414
+P NTIFDAKRLIGR+++DATVQ+DMK WPF++ SD + + + + K F+
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFA 115
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 509 AFFNDSQRQATKDAG 553
A+FNDSQRQATKDAG
Sbjct: 148 AYFNDSQRQATKDAG 162
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 97.5 bits (232), Expect = 6e-21
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +2
Query: 89 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMTP 259
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +3
Query: 366 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
KP ++V K E KTF EE+S+MVLTKMKETAEAYLGK V +AV+TVP
Sbjct: 798 KPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +1
Query: 253 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVDSDEANLRSR*HIRVKTK 405
+P NT+FDAKRLIGR ++D +VQ D+K +PF+V + + H++VK K
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKV----VDKNKKPHVQVKVK 806
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 509 AFFNDSQRQATKDAG 553
A+FND+QRQATKDAG
Sbjct: 846 AYFNDAQRQATKDAG 860
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +2
Query: 77 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 250
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 251 MTP 259
+ P
Sbjct: 90 INP 92
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 363 GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
G V KG PEE+ V+ K++ AE L TV AV++VP
Sbjct: 129 GNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSVP 177
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 253 DPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVDSDE 363
+P NTI+DAKR IG+ F + K + F V +D+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDK 127
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +3
Query: 375 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 509 AFFNDSQRQATKDAG 553
A FND+QRQATKDAG
Sbjct: 47 AHFNDAQRQATKDAG 61
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 89 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 244
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 375 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
I+V Y G+ + F PE+V +M+ T++K TAE L V + VI+VP
Sbjct: 160 IQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 262 NTIFDAKRLIGRKFEDATVQADMKHWPFEV 351
NTI KR IGRKF D VQ ++ H P++V
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKV 150
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 140 GKVEIIANDQGNRTTPSYVAFTDTERLI 223
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 34.3 bits (75), Expect = 0.067
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 369 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 509
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 31.5 bits (68), Expect = 0.47
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 58 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 234
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 235 QEPGGDDPNNTIFDA 279
G DP NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 149 EIIANDQGNRTTPSYVAFT-DTERL 220
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 366 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRSSMTLKGKPQK 545
+PK K + E+ EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 546 MQ 551
Q
Sbjct: 714 SQ 715
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 110 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMTPTTQYSMPNVS 289
T++ + H I+ N G +TP + T A + + MTPT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 290 SDVSSKMLLCKP 325
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 257 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 159
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 58 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 234
L++ N + ++ R GY L R C R + +R + H++L R +RC
Sbjct: 661 LRLVNTRDDKTHGKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTDTETRFCEKRCA 718
Query: 235 QEPGGDDPNNTIFDA 279
G DP N F+A
Sbjct: 719 GTASGMDPKNIPFNA 733
>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 229 CRQEPGGDDPNNTIFDAKRLIGRKFEDATVQADMKHWP 342
C Q D N TI K L+ + ED ++HWP
Sbjct: 389 CLQICANSDGNLTITPVKTLVFKAAEDTKPSHHLRHWP 426
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 17 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 103
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 99 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 242
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 551 LHLLWLAFESH*RTRNRDNCILHSFAKIS 465
++ LWL F + + + D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 99 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 242
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -2
Query: 318 HSSIFELTSDETFGIEYCVVGVIATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFP 139
+S + L + T +EY +GV+ATW R + V AT L W L +++T
Sbjct: 23 YSRLGVLATWSTGDLEYWRLGVLATWSTGDLEYSR-LGVLATWSTGDLEYWRLGVLAT-- 79
Query: 138 CWKTPTQEY 112
W T EY
Sbjct: 80 -WSTGDLEY 87
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 267 CVVGVIATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFPCWKTPTQEYVVPRSIPT 88
C++ I WF P+R S + VV+ S+ ++ F C P + P +IP+
Sbjct: 107 CLLLTIERWFAVVQPLRYQASFSKR--RVVVSLISVYCVACFLCCTLPFEVSFSPENIPS 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,395,197
Number of Sequences: 59808
Number of extensions: 453239
Number of successful extensions: 1386
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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