Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20098
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.0  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 313 PALLEAIPKLGAVIDLTNTDKYYKPEDVKA 402
           P + + +P+L A       D  Y PEDVKA
Sbjct: 283 PLVSQRVPQL-AKNGAYGPDMIYTPEDVKA 311


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
 Frame = -1

Query: 657 LFFQWHSHV--LFQIF 616
           LFF+WH+++  +FQ F
Sbjct: 398 LFFRWHAYIDDMFQEF 413


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 89  RIYMNI-ILLL*SQKLRKFSVCRRQSIRNMPKLPDRWIKYNA 211
           R +MN+  L   + K  K +    ++ +N+P+L D  + YN+
Sbjct: 134 RAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNS 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,702
Number of Sequences: 336
Number of extensions: 3998
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)