Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20098
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    38   0.002
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.9  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   5.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.0  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   8.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   8.7  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = +3

Query: 513 ILLGVHCTHGLNRTGYMVCRYMRDRLGMSGKEAI-----KKFERARGYAIE---RIVYTS 668
           + L VHC  G  RTG ++C Y+    G++ K+++     K+  R  G  I    R VY  
Sbjct: 123 LTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKRMVRGHGLTISSQIRYVYYI 182

Query: 669 DLLKQNP 689
           ++LKQ P
Sbjct: 183 EILKQFP 189


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 510 DILLGVHCTHGLNRTGYMVCRYM 578
           D ++ VHC  GL RTG ++  Y+
Sbjct: 279 DGVIAVHCKAGLGRTGCLIGAYL 301



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 379 YKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDDFLGKDSISC*GCTA 534
           Y  +  +  GI HK++      +P  + VKEF+D  ++ + +D +    C A
Sbjct: 238 YDKKTFENVGIRHKEMYFEDGTVPELSLVKEFIDLTEE-VEEDGVIAVHCKA 288


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 558 NPCGLIRACSAPLTGYRVFSQEIIDGIHKFFHFVFGWQNST 436
           NP G ++  S  + G   F + I+   H     +  WQNST
Sbjct: 125 NPQGALQQNSQFIEGLDDFEKHILRVSHNAHRSLINWQNST 165


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 568 HTM*PVRFNPCVQCTPNRISSL 503
           H   P+R+N    CTPN I+S+
Sbjct: 586 HLEGPIRYNMNSNCTPNSIASI 607


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 337 KLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDD 492
           K G ++    TDK     +V+  GIL K +I  G  +P    +    DA D+
Sbjct: 64  KSGDILLEVETDKATMDVEVQDNGILAKVLIEKGSNIPVGKNIAIVADAEDN 115


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 349 VIDLTNTDKYYKPED---VKAAGILHKKIIMPGRI 444
           +I + NT   Y  E+   V+  G++++KI+ P RI
Sbjct: 254 LITMKNTSSSYSLEELTSVQQMGLVYEKIVFPSRI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,572
Number of Sequences: 5004
Number of extensions: 66934
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)