Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20098
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 45 7e-05
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 42 5e-04
05_01_0120 - 828834-831143 33 0.18
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 3.0
11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534 29 3.9
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641... 29 5.2
08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94... 28 6.9
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 28 9.1
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 IPKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENK-VKEFMDAVDDFLGKD 507
I +G VIDLTNT +YY P + GI H KI GR P+N+ V F+ V FL +
Sbjct: 160 IGMIGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQ 219
Query: 508 SIS 516
S
Sbjct: 220 KQS 222
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDL 674
VHCTHG NRTG+M+ Y+ EAI F + R I + Y L
Sbjct: 230 VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEAL 279
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 340 LGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENK-VKEFMDAVDDFLGKDSIS 516
+G VIDLTNT +YY P + G + KI GR P+N+ V F+ V FL + S
Sbjct: 135 IGLVIDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQS 194
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRY-MRDRLGMSGKEAIKKFERAR 635
VHCTHG NRTG+M+ Y MR +L S EA+ F + R
Sbjct: 202 VHCTHGHNRTGFMIVHYLMRTQLS-SVTEALNIFAQRR 238
>05_01_0120 - 828834-831143
Length = 769
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDLLK 680
VHC G++R+ +V Y+ R G S +A + + ARG A + + LL+
Sbjct: 228 VHCCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARGIANPNMGFACQLLQ 279
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 334 PKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDDF 495
P +G IDL + D Y+KPE V + + ++ G PP +D VD F
Sbjct: 361 PAVGPSIDLLSGDDYFKPEPVNS-----QALVSVGN--PPAASANNTLDLVDMF 407
>11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534
Length = 312
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 117 CNLKNYVNSVYVEDSLYAICLNFP 188
C K Y NS + E SLY +CL P
Sbjct: 181 CRGKFYFNSFFTEISLYMVCLKTP 204
>02_05_0907 -
32663544-32663623,32663673-32663863,32664065-32664162,
32664406-32664519,32664589-32664646,32664778-32664867,
32665414-32665505,32665898-32666008,32666120-32666374,
32666512-32666577,32666725-32666853
Length = 427
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 340 LGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGR 441
+GA IDL + ++Y K V A +L KK++ GR
Sbjct: 169 VGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGR 202
>08_01_0117 +
941334-941339,941720-941906,942444-942565,942648-942656,
942965-943067,943204-943247,943487-943516,943615-943737,
943816-943841,943934-944015,944137-944178,944259-944292,
944424-944451,944779-945022,945023-945124,945318-945443,
945533-945715,945803-945961
Length = 549
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 207 LYFIHLSGSLGILRIDCLLHTLNLRSF 127
LY + LS L + RI CL+ TL+LR+F
Sbjct: 350 LYLLVLSFHLQVNRIMCLIVTLSLRAF 376
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 DIPALLEAIPKLGAVIDL-TNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKE 471
D A +E + ++G + L ++ Y+P ++ A G +++ PG I+ ++V+E
Sbjct: 537 DGAARVEELRRIGDIASLGARVEELYRPGELAARGSRVEELYRPGEIVARGSRVEE 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,739
Number of Sequences: 37544
Number of extensions: 403694
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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