Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20098
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)            49   4e-06
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)                    33   0.19 
SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)                      33   0.19 
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_24691| Best HMM Match : PAN (HMM E-Value=9.6e-10)                   29   4.0  
SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)                    29   5.3  
SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9)                  28   9.3  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_38919| Best HMM Match : Fumarate_red_D (HMM E-Value=4.7)
          Length = 479

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 34/56 (60%)
 Frame = +1

Query: 310 IPALLEAIPKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFM 477
           I  L +   KLG V+D T T +YY P +  A GI++KK++  G ++P +  +K ++
Sbjct: 228 IEQLAQREMKLGLVLDFTFTTRYYDPREFTAEGIIYKKMMCAGHVIPKKKDIKRYL 283



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 570 RYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDLLKQ 683
           RY+ D  G   ++AI+ F +ARG+ +ER  Y  DL K+
Sbjct: 281 RYLIDCCGYEPEKAIEAFNQARGHPLERENYLEDLKKR 318


>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
          Length = 396

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 579 SYTGTPCNPCGLIRACSAPLTGYRVFSQEIIDGIHK 472
           S +G  C  CG  R+C      YR   QEI DG+++
Sbjct: 164 SCSGRTCESCGTYRSCRDYHVTYRELGQEIADGVYQ 199


>SB_54946| Best HMM Match : EGF (HMM E-Value=0.02)
          Length = 206

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 579 SYTGTPCNPCGLIRACSAPLTGYRVFSQEIIDGIHK 472
           S +G  C  CG  R+C      YR   QEI DG+++
Sbjct: 38  SCSGRTCERCGTYRSCRDHHVTYRELGQEIADGVYQ 73


>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 525 VHCTHGLNRTGYMVCRY-MRDRLGMSGKEAIKKFERAR 635
           +HC  G  RTG M+C Y + +      KEA++ +  AR
Sbjct: 64  IHCKAGKGRTGVMICAYLLHNGHFKDTKEAMEYYGNAR 101


>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDLLK 680
           VHC  G++R+  +   Y+   LG+S  EA +  +  R      + +   LLK
Sbjct: 102 VHCHAGVSRSATVTVAYVMQHLGLSLNEAYQFVKEKRPTISPNLNFMGHLLK 153


>SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 LGVHCTHGLNRTGYMVCRYMRDRLGMSGKEAI 614
           + +HC  GL RTG ++  Y+  +   S  EA+
Sbjct: 239 VAIHCRAGLGRTGTLIACYLIKQYKFSAAEAV 270


>SB_24691| Best HMM Match : PAN (HMM E-Value=9.6e-10)
          Length = 359

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 474 KFFHFVFGWQNSTGHYDFFM*NTCSL 397
           KF   V  W N+ G Y FF+ NT  L
Sbjct: 237 KFHRVVITWDNTNGDYQFFVDNTLVL 262


>SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)
          Length = 618

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 507 LDILLGVHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERAR 635
           LD + G+HC H    T   +   +  ++ +SG+  ++ +E  R
Sbjct: 152 LDKVTGIHCAHSRTHTQCFLIAAIETKIFLSGENELETYEWIR 194


>SB_56616| Best HMM Match : zf-NF-X1 (HMM E-Value=9.9)
          Length = 275

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 582 LSYTGTPCNPCGLIRACSAPLTGYR 508
           L Y G  C+P G  + C  P TGY+
Sbjct: 162 LDYCGLYCHPSGDSKYCRDPSTGYK 186


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 582 LSYTGTPCNPCGLIRACSAPLTGYR 508
           L Y G  C+P G  + C  P TGY+
Sbjct: 162 LDYCGLYCHPSGDSKYCRDPSTGYK 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,018,949
Number of Sequences: 59808
Number of extensions: 484364
Number of successful extensions: 1091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)