Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20098
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 53 2e-07
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi... 53 2e-07
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi... 48 9e-06
At5g28210.1 68418.m03416 mRNA capping enzyme family protein simi... 46 3e-05
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /... 31 1.1
At3g11330.1 68416.m01378 leucine-rich repeat family protein 29 2.5
At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634... 29 4.4
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 28 5.8
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 28 7.6
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 KLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPEN-KVKEFMDAVDDFL 498
KLG VIDLTNT +YY D+K GI H KI GR P+N V F++ V+ F+
Sbjct: 136 KLGLVIDLTNTTRYYSTTDLKKEGIKHVKIACKGRDAVPDNVSVNAFVNEVNQFV 190
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDL 674
VHCTHG NRTG+M+ Y+ M+ +A+K F AR I + Y L
Sbjct: 202 VHCTHGHNRTGFMIVHYLMRSGPMNVTQALKIFSDARPPGIYKPDYIDAL 251
>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 471
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 KLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPEN-KVKEFMDAVDDFL 498
KLG VIDLTNT +YY D+K GI H KI GR P+N V F++ V+ F+
Sbjct: 136 KLGLVIDLTNTTRYYSTTDLKKEGIKHVKIACKGRDAVPDNVSVNAFVNEVNQFV 190
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDL 674
VHCTHG NRTG+M+ Y+ M+ +A+K F AR I + Y L
Sbjct: 202 VHCTHGHNRTGFMIVHYLMRSGPMNVTQALKIFSDARPPGIYKPDYIDAL 251
>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF03919: mRNA capping enzyme
C-terminal domain
Length = 607
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 KLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPEN-KVKEFMDAVDDFL 498
+LG VIDLTNT +YY D+K GI H KI GR P+N V F++ V F+
Sbjct: 118 QLGLVIDLTNTTRYYPTLDLKKDGIKHVKIACRGRDAVPDNVSVNTFVNEVLQFV 172
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRY-MRDRLGMSGKEAIKKFERARGYAIERIVYTSDL 674
VHCTHG NRTG+M+ Y MR M+ +A+K F AR I + Y L
Sbjct: 184 VHCTHGHNRTGFMIVHYLMRSMPTMNVTQALKLFSDARPPGIYKPDYIDAL 234
>At5g28210.1 68418.m03416 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF03919: mRNA capping enzyme
C-terminal domain
Length = 625
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRY-MRDRLGMSGKEAIKKFERARGYAIERIVYTSDLLK 680
VHCTHG NRTG+M+ Y MR R MS +A+K F AR I + Y L +
Sbjct: 160 VHCTHGHNRTGFMIVHYLMRSRPMMSVTQALKIFSDARPPGIYKPDYIDALYR 212
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 331 IPKLGAVIDLTNTDKYYKPE-DVKAAGILHKKIIMPGRILPPEN-KVKEFMDAVDDF 495
+ K+G VIDLTNT +YY P +++ I + KI GR P+N V F+ V F
Sbjct: 92 LTKIGLVIDLTNTTRYYHPNTELRQNRIEYVKIRCSGRDSVPDNVSVNTFVHEVTQF 148
>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
phosphatase and tensin, putative (PTEN1) identical to
phosphatase and tensin homolog [Arabidopsis thaliana]
GI:21535746
Length = 412
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 525 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERAR 635
VHC G RTG MV Y+ GMS +EA++ + R
Sbjct: 150 VHCMAGKGRTGLMVSAYLVYG-GMSAEEALEMYASRR 185
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 352 IDLTNTDKYYKPEDVKAAGILHK-KIIMPGRILPPENKVKEFMDAVDDFLGKDSIS 516
+DL+N + P+ L K + ++PPE VKE ++AV ++G+ IS
Sbjct: 390 LDLSNNQIHALPDTFGTLDSLTKLNVDQNPLVVPPEEVVKEGVEAVKTYMGQRRIS 445
>At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634:
Arabidopsis thaliana protein of unknown function
(DUF794)
Length = 340
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 641 IATCSFKFFNSLLSGHSEAISHIPAH 564
+A C + N LLSG S+ I H+P H
Sbjct: 39 VAHCVHRCRNMLLSGLSKIIHHVPVH 64
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 565 TM*PVRFNPCVQCTPNRISSLFP 497
T+ PVR+ P TPNRISS P
Sbjct: 31 TLKPVRYYPFQSLTPNRISSRSP 53
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 188 DRWIKYNACGRVIEGTRIICFKDLYQRVNKFKNH 289
+R ++Y+ GR+I+G +I K Y+ NH
Sbjct: 366 ERQVEYDRAGRIIKGQEVILPKSKYEEDVHANNH 399
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,492
Number of Sequences: 28952
Number of extensions: 334429
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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