Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20097
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   151   1e-37
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.6  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.1  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   2.1  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   6.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  151 bits (365), Expect = 1e-37
 Identities = 69/106 (65%), Positives = 87/106 (82%), Gaps = 1/106 (0%)
 Frame = +3

Query: 213 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 392
           K +   E  L    IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 393 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGKR-SESHT 527
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 38/55 (69%), Positives = 47/55 (85%)
 Frame = +2

Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYTQ 667
           G  +G PHTVP KV+GKCGSVTVRL+ APRG G+V+APV K+ LQ+AG++DCYTQ
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQ 198



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +1

Query: 154 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLP K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 151 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 26
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 682 PLNHELSVAVLYTSHLKKLLRNWR 611
           P NH +S AV+  + L +LL NWR
Sbjct: 131 PGNHSVSGAVIQPTALDELLPNWR 154


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 192 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 308
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 517 KATHRPLQGHRQVWFCNSPADSCPSWYWN 603
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 479 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 345
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,712
Number of Sequences: 5004
Number of extensions: 65825
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)