Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20097
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   141   5e-34
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   4.5  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   6.0  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   6.0  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  141 bits (341), Expect = 5e-34
 Identities = 69/86 (80%), Positives = 76/86 (88%)
 Frame = +3

Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143

Query: 435 ATAIRGAIILAKLSVLPVRRGYWGKR 512
           ATAIRGAI+ AKL+V+PVRRGYWG +
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/54 (85%), Positives = 48/54 (88%)
 Frame = +2

Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
           G KIG PHTVPCKVTGKC SV VRLI APRGTGIVSAPVPKKLL MAG++DCYT
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYT 220



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +1

Query: 157 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
           E + EW PVTKLGRLV+E KI  LE IYL SLP K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 533 PCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYTQLVVQW 682
           P ++   C + T +  + P+ +  V  P P  L+Q +GVQ+   Q +  W
Sbjct: 226 PTQIQQNCQTTTTQQQYCPQQSAPVVQPQPCPLVQGSGVQNAQYQGICSW 275


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 497 TSSNW*NRQLSKDNSASNGSG 435
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 559  FCNSPADSCPSWYWNCVCASS*EASSDGWCTGLLHSARGSMAL-GKFC*SHICCHCQDIC 735
            FC+  A+ C + Y  CVCA +  + S   C   +++ +GSMA  G  C +   C     C
Sbjct: 1998 FCSKGAE-CRNGY--CVCAKTNYSDSTLDCVSSINANQGSMAYPGSKCNATTSCQQNSSC 2054


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 311 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 454
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 311 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 454
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,597
Number of Sequences: 27780
Number of extensions: 390624
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)