Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20097
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 1e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 4e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 4e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 4e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 4e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 32 0.46
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.4
At2g34060.1 68415.m04170 peroxidase, putative similar to peroxid... 29 4.3
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.6
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 7.4
At2g37930.1 68415.m04656 expressed protein 28 7.4
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 7.4
At3g01450.1 68416.m00069 expressed protein 27 9.8
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (387), Expect = 1e-39
Identities = 75/104 (72%), Positives = 87/104 (83%), Gaps = 1/104 (0%)
Frame = +3
Query: 219 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 398
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 399 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG K + HT
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 218
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++++WVPVTKLGRLV G I ++E IYL SLP K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (386), Expect = 2e-39
Identities = 72/92 (78%), Positives = 84/92 (91%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 435 ATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
ATAIRGAIILAKLSV+P+RRGYWG K + HT
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 209
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++++WVPVTKLGRLV+EGKI K+E IYL SLP K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 73/92 (79%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 435 ATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
ATAIRGAIILAKLSV+PVRRGYWG K + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 73/92 (79%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 435 ATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
ATAIRGAIILAKLSV+PVRRGYWG K + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 73/92 (79%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 435 ATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
ATAIRGAIILAKLSV+PVRRGYWG K + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 73/92 (79%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 434
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 435 ATAIRGAIILAKLSVLPVRRGYWG-KRSESHT 527
ATAIRGAIILAKLSV+PVRRGYWG K + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/54 (75%), Positives = 48/54 (88%)
Frame = +2
Query: 503 G*KIGKPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQDCYT 664
G KIGKPHTVPCKVTGKCGSVTVR++ APRG+GIV+A VPKK+LQ AG+ D +T
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFT 217
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 160 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 261
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 303 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 482
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 483 PV 488
V
Sbjct: 209 QV 210
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 518 KPHTVPCKVTGKCGSVTVRLIHAPRGTGIVSAPVPKKLLQMAGVQD 655
K T P + G G+ V L A GTG+++ + +L+MAGV++
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 349 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLMVKKTSK 236
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 520 LSDLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 341
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 340 VCFCTGMIFRTSSFR 296
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At2g34060.1 68415.m04170 peroxidase, putative similar to peroxidase
ATP20a {Arabidopsis thaliana} GP|9757794|dbj|BAB08292
Length = 346
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 414 VKCSKEVATAIRGAIILAKLSVLPVRRGYW-GKRSESHT--PSLARSPASV 557
V CS +A A R I LA V++G W GKRS + P++ RS ++V
Sbjct: 138 VSCSDILAIAARDFIHLAGGPYYQVKKGRWDGKRSTAKNVPPNIPRSNSTV 188
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 369 AFVAIGDNNGHIGLGVKCSKE 431
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 552 LPVTLQGTVCGFPIFYPSNLF 490
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 323
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 524 HTVPCKVTGKCGSVTVRL 577
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 454 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 332
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,113
Number of Sequences: 28952
Number of extensions: 369819
Number of successful extensions: 1049
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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