Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20096
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 122 4e-29
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 93 3e-20
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 50 3e-07
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 42 6e-05
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 36 0.004
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 35 0.012
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 34 0.022
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 33 0.029
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.20
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 31 0.20
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 28 1.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 1.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 1.9
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 27 3.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 26 4.4
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 4.4
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 5.8
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 5.8
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 26 5.8
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 5.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 7.6
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 7.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 7.6
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 122 bits (295), Expect = 4e-29
Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Frame = +1
Query: 253 RSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVN 432
+S+VPAFL V DIAGL +GA+ G GLGNAFLSH++A DAI+ + RAFDD ++IHV+GDV+
Sbjct: 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVD 139
Query: 433 PVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRL-----FLVD 597
P+RDL I +EL +KD E + +H+E + ++ A L + ++ + +L +
Sbjct: 140 PIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGA-NTLEMKAKKEEQAIIEKVYQYLTE 198
Query: 598 EKKHIRFGDWSALILK-FK*IPVLTSKP 678
K+ IR GDWS ++ + +LT+KP
Sbjct: 199 TKQPIRKGDWSNREVEIINSLYLLTAKP 226
Score = 94.3 bits (224), Expect = 1e-20
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +2
Query: 62 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYLC 238
GR G NLK GIVG+PNVGKSTFF +TKS N+P+ TIDP E++V VPDER+D+LC
Sbjct: 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC 74
Query: 239 EYHKPEAK 262
E +KP+++
Sbjct: 75 EAYKPKSR 82
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 93.5 bits (222), Expect = 3e-20
Identities = 43/85 (50%), Positives = 63/85 (74%)
Frame = +1
Query: 253 RSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVN 432
++++PA L + D AGL R +++G+GLGNAFLS+I++ DA+F L RAF + V HV+ V+
Sbjct: 105 KTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDALFQLVRAFPEAQVPHVEKSVD 164
Query: 433 PVRDLETIAEELRLKDEEQLLQHIE 507
PVRDL+ I EEL LKD E L +++
Sbjct: 165 PVRDLQIIQEELLLKDAEFLESYLK 189
Score = 82.2 bits (194), Expect = 6e-17
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 59 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAA-AENFPFCTIDPNESRVPVPDERYDYL 235
+GR G +LK+GIVG+PN+GKST F +LTK+ N+PF TIDP ++ PV D +Y+ L
Sbjct: 39 LGRPGNHLKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELL 98
Query: 236 CEYHKPEAK 262
CE ++P+ +
Sbjct: 99 CEIYQPKTR 107
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 68 VGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNES 199
+G ++ +G VG P+ GKST N LT + A NFPF TI+PN +
Sbjct: 1 MGRDILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRA 44
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +1
Query: 274 LNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 381
+ ++D+AGL+ GA G+GLGN FL ++ DA+ ++
Sbjct: 79 IQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHV 114
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 42.3 bits (95), Expect = 6e-05
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 74 TNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDP--NESRVPVPDERYDY 232
T ++G+VG+PN GKST N LT S++ + F TI P + +PD+ +
Sbjct: 235 TICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSF 289
Score = 34.7 bits (76), Expect = 0.012
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +1
Query: 280 VVDIAGLVRGAAEGQGLGNAFLSHIK 357
+ DI G+++GA++G+GLG FL H++
Sbjct: 293 LADIPGIIKGASDGKGLGYDFLRHVE 318
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V +G P+VGKST + +TK+++A ++ F T+
Sbjct: 64 RVAFIGFPSVGKSTLLSAITKTKSATASYEFTTL 97
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 65 RVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 172
++ ++L VG++G PNVGKS+ N L A + P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAP 300
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
+ G PNVGKS+F N +T++Q + + F T
Sbjct: 173 VCGYPNVGKSSFMNKVTRAQVDVQPYAFTT 202
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 59 IGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+ R G VG +G P+VGKST LT +++ A + F T+
Sbjct: 58 VARTGIGT-VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTL 98
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQ 151
+ VG++G PN GKS+ N L K +
Sbjct: 311 ISVGLIGFPNAGKSSIINTLRKKK 334
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 74 TNLKVGIVGVPNVGKSTFFNVLTKSQ 151
T + G+VG PNVGKS+ N L S+
Sbjct: 300 TKMTFGLVGYPNVGKSSTINALVGSK 325
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +1
Query: 343 LSHIKACDAIFNLCRAFDDED-------VIHVDGD--VNPVRDLETIAEELRLKDEEQLL 495
L+ ++A + ++C FD+ED + VDGD + + D E + ++ L LL
Sbjct: 58 LARVRAMKRLVSICSNFDEEDNWNGVWNTLVVDGDSHASAMIDYEGLLDKCSL--SRNLL 115
Query: 496 QHIENWTEWSTE 531
+ I ++ E++T+
Sbjct: 116 ELINDYAEYTTQ 127
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAA----AENFPFCTIDPN 193
KV IVG+ GKST +L K+ + + +P ID N
Sbjct: 1130 KVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTN 1170
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +1
Query: 442 DLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRN 546
D+ ++L+L +EE++++ IE + WS + +++
Sbjct: 837 DINFSDDDLKLMNEEEIMEQIETFKAWSMKFKEKS 871
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 77 NLKVGIVGVPNVGKSTFFNVLTKSQAA 157
++K+ IVG NVG +T F +L AA
Sbjct: 20 SIKIVIVGAGNVGSTTAFTLLLSGLAA 46
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Frame = +2
Query: 134 VLTKSQAAAENFPFCTID-------PNESRVPVPDERYDYLCEYHKPEAKCQ-LSSTW 283
+L K++ A EN P + P + R P+P + + C++H C+ L W
Sbjct: 155 LLRKAKVAQENLPPSIVTELKKQLAPLDLRTPLPQDLLELSCKWHAASLVCEDLQPEW 212
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 56 LIGRV-GTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
L RV T+ K+ I G N GKST N L E+ CT
Sbjct: 146 LFSRVEDTSSKILITGDLNAGKSTLCNALVHKDILPEDQQPCT 188
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 56 LIGRVGTNLKVGIVGVPNVGKSTFFNVL 139
LI R L + + G GK+TFFN L
Sbjct: 23 LIKRKECGLTIMLCGASGTGKTTFFNTL 50
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 328 LGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVNPVRD 444
LG + S KA DAI L + F+D D V ++NP+ +
Sbjct: 196 LGFSSSSKPKAVDAIVKLYKVFNDCDATQV--EINPLAE 232
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 389 ARHKLKIASQALMWDRKAFPNPWPSAAPRTRPAMSTT 279
+RH L ++ D AFP WPS +ST+
Sbjct: 46 SRHSLGKLMVSMYADSMAFPKNWPSTKENLTLVLSTS 82
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 433 PVRDLETIAEELRLKDEEQLLQHI---ENWTEWSTEAAKRNLNLNTIPWLKSRLFLVDEK 603
P+R ++AE+ ++D H + TEW + ++L+ +TI + S + +
Sbjct: 3 PIRQAVSLAEKKAIRDYYNQSAHRIPQKEVTEWFRKTYNKDLSQSTISEILSPKYSYLDD 62
Query: 604 KHIRFGD 624
+R GD
Sbjct: 63 GSVRLGD 69
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 445 LETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLN 552
LE EE+R +++ + Q N T + E +RN+N
Sbjct: 110 LEQRLEEIRKRNQSRKNQMSNNSTTYHRETKRRNIN 145
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 595 QLGIVLTLARESYSGLSFFSPPLLTTRSSSRYAAEAAP 482
Q+ +V + +S SG S + PLL T S Y+ A+P
Sbjct: 411 QINVVPSSPSKSQSGPSLPANPLLQTDISITYSQSASP 448
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/86 (23%), Positives = 34/86 (39%)
Frame = +1
Query: 370 IFNLCRAFDDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNL 549
+ L AF D++ +++ + P D T L E Q ++ + K
Sbjct: 222 LVKLYYAFQDKEKVYLAMEYVPGGDFRTFLTTKGLLHENQTRFYLAEMVAAISAVHKLGY 281
Query: 550 NLNTIPWLKSRLFLVDEKKHIRFGDW 627
LK FL+D+K HI+ D+
Sbjct: 282 MHRD---LKPENFLIDQKGHIKLSDF 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,368
Number of Sequences: 5004
Number of extensions: 48542
Number of successful extensions: 202
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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