Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20096
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 127 7e-30
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 91 1e-18
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 42 3e-04
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 42 3e-04
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 40 0.002
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031... 39 0.003
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 34 0.091
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 34 0.091
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 34 0.12
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 33 0.16
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 33 0.21
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 33 0.21
07_01_0075 - 558829-560859 33 0.28
06_01_0668 - 4882174-4884204 33 0.28
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 32 0.49
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 31 1.1
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 31 1.1
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 30 1.5
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 30 1.5
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 30 1.5
04_01_0574 - 7450124-7450525,7450957-7451322 30 2.0
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 29 3.4
04_01_0061 + 617966-618025,618619-618780 29 4.5
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 28 6.0
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 28 7.9
03_02_0440 - 8500068-8501252 28 7.9
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 127 bits (307), Expect = 7e-30
Identities = 70/143 (48%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Frame = +1
Query: 253 RSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVN 432
+S+V A+L + DIAGLVRGA G+GLGNAFLSHI+A D IF++ RAF+D++V H+D V+
Sbjct: 55 KSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVD 114
Query: 433 PVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRLFLVDEKKHI 612
PVRDLETI EELRLKD E + I++ + + + L L K + L ++ K +
Sbjct: 115 PVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHL-EDGKDV 173
Query: 613 RFGDW-SALILKFK*IPVLTSKP 678
RFGDW SA I +LT+KP
Sbjct: 174 RFGDWKSADIEILNTFQLLTAKP 196
Score = 96.3 bits (229), Expect = 2e-20
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCEYHKPEAK 262
+VG+PNVGKSTFFN++TK AENFPFCTIDPNE+RV VPDER+D+LC+ +KP+++
Sbjct: 1 MVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSE 57
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/109 (35%), Positives = 72/109 (66%)
Frame = +1
Query: 238 RIS*TRSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHV 417
++S ++ +P + +VDIAGLV+GA++G+GLGN FLS+I+ D+I + R F+D+D++HV
Sbjct: 167 KLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHV 226
Query: 418 DGDVNPVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTI 564
G V+P D++ I EL D +Q+ + ++ + T+ + + + T+
Sbjct: 227 SGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKIPTV 275
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 65 RVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPF 175
R+ +L+ GIVG+PNVGKST FN + ++ +A + F
Sbjct: 56 RISMSLRAGIVGLPNVGKSTLFNAIVRNLPSASSEEF 92
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 149 QAAAENFPFCTIDPNESRVPVPDERYDYLCEYHK 250
+A A NFPFCTI+PN V +PD R L + K
Sbjct: 137 KAQAANFPFCTINPNVGVVAIPDARLHVLSKLSK 170
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPN 193
VGIVG PN GKST ++ ++ N+PF T+ PN
Sbjct: 455 VGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPN 490
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRV 205
VG+VG+PN GKST + +T ++ ++PF T+ PN R+
Sbjct: 279 VGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRL 318
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +1
Query: 280 VVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVNPVRDLETIA 459
+ D+ GL+ GA G+GLG FL H++ I ++ A D+ PV D + +
Sbjct: 335 LADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADD----------PVDDYKIVR 384
Query: 460 EELRLKDEEQL 492
EELR+ + + L
Sbjct: 385 EELRMYNPQYL 395
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPN 193
VG+VG+PN GKST + L++++ ++ F T+ PN
Sbjct: 342 VGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPN 377
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +1
Query: 274 LNVVDIAGLVRGAAEGQGLGNAFLSHIK 357
+ V DI GL++GA E +GLG+AFL HI+
Sbjct: 389 VKVADIPGLIKGAHENRGLGHAFLRHIE 416
>11_06_0250 +
21701741-21701826,21702094-21702246,21703060-21703176,
21703288-21703402,21703604-21703624,21703710-21703757,
21704156-21704293,21704789-21704884,21704971-21705084,
21705364-21705432,21705613-21705683,21705785-21705878,
21706202-21706327,21706425-21706514,21706651-21706749
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRV 205
V +VG N GKST N LT + AE+ F T+DP RV
Sbjct: 256 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRV 295
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+VG+VG P+VGKST N LT + + + F T+
Sbjct: 77 RVGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTL 110
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 34.3 bits (75), Expect = 0.091
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V ++G P+VGKST +LT + + A ++ F T+
Sbjct: 64 RVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTL 97
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVP 214
V +VG N GKST + L+++ +++ F T+DP V +P
Sbjct: 290 VAVVGYTNAGKSTLVSALSETDLYSDDRLFATVDPRLRSVILP 332
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQ 151
+ VGIVG+PNVGKS+ N L +S+
Sbjct: 269 ITVGIVGLPNVGKSSLINSLKRSR 292
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 74 TNLKVGIVGVPNVGKSTFFNVLTKSQAA 157
+ L+V I+G PNVGKS+ N +KS+ A
Sbjct: 304 SGLQVAIIGRPNVGKSSLLNAWSKSERA 331
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 77 NLKVGIVGVPNVGKSTFFNVLTKSQAAA 160
+L VGIVG PN GKS+ N + ++ AA
Sbjct: 148 SLSVGIVGAPNAGKSSLTNTMVGTKVAA 175
>07_01_0075 - 558829-560859
Length = 676
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
I G PNVGKS+F N +T++ + + F T
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTT 202
>06_01_0668 - 4882174-4884204
Length = 676
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
I G PNVGKS+F N +T++ + + F T
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTT 202
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQ 151
L++ IVG PNVGKST N L + Q
Sbjct: 312 LQLAIVGRPNVGKSTLLNTLLQEQ 335
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
+VG PNVGKS+ +L+ + ++PF T
Sbjct: 249 LVGSPNVGKSSLVRILSSGKPEVCSYPFTT 278
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTK 145
++ GIVG PNVGKS+ N L K
Sbjct: 401 VRAGIVGYPNVGKSSLINRLLK 422
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 59 IGRVGTNLKVGIVGVPNVGKSTFFNVL 139
+ V ++ VG VG PNVGKS+ N L
Sbjct: 307 VSSVAKHVVVGFVGYPNVGKSSTINAL 333
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRV 205
+ VG VG PNVGKS+ N L +S++ + P P E++V
Sbjct: 317 ISVGFVGYPNVGKSSVINTL-RSKSVCKVAPI----PGETKV 353
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 484 EQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRLFLVDEKKHIR 615
E+++ E W +W TE +R N +P+L + L +++E++ ++
Sbjct: 325 EKIIMEEEKWKKWKTENIRRKHNY--VPFLFNFLKILEERQQLK 366
>04_01_0574 - 7450124-7450525,7450957-7451322
Length = 255
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 349 HIKACDAIFNLCRAFDDEDVIHVDGDVNPVRDLETI 456
H K C +F L A+DD++ +GD P D ET+
Sbjct: 156 HNKVCKCLFLLDLAYDDDE--EDEGDTTPAADPETL 189
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAA 157
+V I+G PNVGKS FN L A
Sbjct: 162 RVAIIGRPNVGKSALFNRLVGGNRA 186
>04_01_0061 + 617966-618025,618619-618780
Length = 73
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 379 LCRAFDDEDVIHVDGDVNPV-RDLETIAEEL 468
L A DD V+HVDGDV V RD+ AE L
Sbjct: 25 LAGAVDDAGVVHVDGDVEGVHRDVLHEAELL 55
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVL 139
VG VG PNVGKS+ N L
Sbjct: 333 VGFVGYPNVGKSSTINAL 350
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYD 229
L V +VGVPNVGKS N + + FP + + P+P D
Sbjct: 137 LLVMVVGVPNVGKSALINSI--HRIVTSRFPVQDKNKRATVGPLPGVTQD 184
>03_02_0440 - 8500068-8501252
Length = 394
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 341 KAFPNPWPSAAPRTRPAMSTTLRKAGTLLLVYDIRIGSHTFHQVQ 207
+AFP P PS A RT A+ T + L+V + + S T + Q
Sbjct: 155 RAFPPPLPSLARRTVGAVQMTQDRRDGRLVVKAVPVPSATLFRAQ 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,034
Number of Sequences: 37544
Number of extensions: 312931
Number of successful extensions: 1199
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -