Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20096
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26) 46 4e-05
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 37 0.017
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 37 0.017
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19) 36 0.040
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 31 0.86
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 31 0.86
SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5) 31 0.86
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 31 0.86
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_37894| Best HMM Match : DUF16 (HMM E-Value=9.4) 30 2.0
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 29 4.6
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44) 28 6.0
SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
Length = 534
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 262 VPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVD-GDVNPV 438
VP L D+AGLV GA EG+G GN F++ + D + ++ A + D + D +P
Sbjct: 224 VPVILK--DVAGLVPGACEGRGKGNKFMNDLLDADVLIHVIDASGETDENGKETSDYDPS 281
Query: 439 RDLETIAEEL 468
+D+E + EEL
Sbjct: 282 QDVEWLYEEL 291
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLT-KSQAAAENFPFCTIDPNESR 202
+G++G P+ GKSTFFN T +++A + PF TI+PN R
Sbjct: 155 IGLIGKPSAGKSTFFNAATQQNRARVASHPFTTIEPNIGR 194
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V ++G P+VGKST LT++Q+A ++ F T+
Sbjct: 65 RVALIGFPSVGKSTLLTKLTQTQSACASYEFTTL 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 268 AFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDE 402
A + ++D+ G++ GAA+G+G G ++ + D + + A E
Sbjct: 110 ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDASKGE 154
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V ++G P+VGKST LT++Q+A ++ F T+
Sbjct: 65 RVALIGFPSVGKSTLLTKLTQTQSACASYEFTTL 98
>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
Length = 255
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 95 VGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPD 217
VG PN GKST ++++ +PF T++P+ V D
Sbjct: 1 VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEYDD 41
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 280 VVDIAGLVRGAAEGQGLGNAFLSHIKAC 363
V DI GL+ A +GLG+ FL HI+ C
Sbjct: 136 VADIPGLIPDAHLNKGLGHTFLRHIERC 163
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 68 VGTNLKVGIVGVPNVGKSTFFNVLTKSQ 151
+ T++ VG+VG PNVGKS+ N L +S+
Sbjct: 452 IKTSITVGVVGFPNVGKSSIINSLKRSR 479
>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -2
Query: 162 SAAA*LLVRTLKNVDFPTLGTPTIPTFKLVPT 67
S A LLVR L+ + PTL TPT P K PT
Sbjct: 209 SCLATLLVRPLETIPAPTLTTPTSPALKETPT 240
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
+ G PNVGKS+F N +T++ + + F T
Sbjct: 88 VCGFPNVGKSSFMNKVTRADVDVQPYAFTT 117
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAA 160
+G+VG PNVGKS+ N + +S+ A
Sbjct: 163 IGLVGYPNVGKSSTINTILQSKKVA 187
>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
Length = 839
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 167 FPFCTIDPNESRVPVPDERYDYLCEYHKPEAKCQLSS 277
F T+DPN + +PDE+ D + + + KC L S
Sbjct: 174 FLLLTLDPNVKKAEIPDEQTDDVTKPQQSRGKCALVS 210
>SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5)
Length = 94
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 253 RSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIK 357
RS +++V D+ GLV GA +G+ + FL H++
Sbjct: 52 RSADTPYISVADLPGLVEGAHLNRGMVHKFLKHVE 86
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFN-VLTKSQAAAENFPFCTID 187
V +VG PNVGKST N +L + A ++ P T D
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRD 58
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQAAA 160
LKV I+G PN GKST N L + A
Sbjct: 40 LKVAIIGEPNSGKSTLINQLVGEKIVA 66
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVL 139
+ VG++G PNVGKS+ N L
Sbjct: 168 ISVGLIGYPNVGKSSIINTL 187
>SB_37894| Best HMM Match : DUF16 (HMM E-Value=9.4)
Length = 244
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 162 SAAA*LLVRTLKNVDFPTLGTPTIPTFKLV 73
S AA V +K++DFP LG P I KLV
Sbjct: 175 SRAAEQYVYVIKDLDFPLLGRPAIEQLKLV 204
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVL--TKSQAAAENFPFCTIDPNESR 202
++G VG P+VGKST L S+ AA F T P R
Sbjct: 50 RIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIR 91
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = +1
Query: 355 KACDAIFNLCRAFDDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIENWTE 519
K + I N R + +E+++ G++ + DLE + + +E ++I++W +
Sbjct: 805 KRSETITNEIRIYTNEEIMATLGEIQSIEDLEAKLGTVNIPWQEIAPRNIQDWMD 859
>SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 229 VIPFIRYRYPTLIRVDGAER-KVFSCCLTLG 140
++PF +YRY +IR D R + +SC TLG
Sbjct: 152 ILPFDKYRYHPVIRRDNHIRLRKYSCPETLG 182
>SB_39561| Best HMM Match : ELMO_CED12 (HMM E-Value=2.52234e-44)
Length = 520
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 146 SQAAAENFPFCTIDPNESRVPVPDERYDYLCEY 244
SQ A+NFPFC + N +R+ + R L +Y
Sbjct: 382 SQHEAQNFPFCVMSINITRIALQTLREGKLNKY 414
>SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 456 NCLQVSYRIYVTVNMDDVFIIECTTQVK 373
N VSYR Y N+DD F I+CT K
Sbjct: 249 NDADVSYRCYNPDNVDDRFGIQCTKNGK 276
>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 406 VIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNL 549
VI VDG + R + ++ + KD+E LL H ++ + T+ N+
Sbjct: 122 VIAVDGSEHSDRAFDFYSKSMHRKDDEVLLIHANDFADRHTQEHHHNV 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,247
Number of Sequences: 59808
Number of extensions: 361275
Number of successful extensions: 3352
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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