Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20096
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 299 SCAALLKAKDWETPFCPTSKLVMLFLTCVVHSMMKTSSMLTV 424
           +CAAL +  +W  P+     LV L +  +V+ M+   ++L +
Sbjct: 50  ACAALYERVEWSGPWI----LVTLIVLAIVNVMVVLGNVLVI 87


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 320 PSAAPRTRPAMSTTLRKAGTLLLVYDIRIGSH 225
           P    +   AM  TL K  T  +V  +RIG+H
Sbjct: 139 PQGGVQALEAMLYTLDKLNTQDIVPGVRIGAH 170


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 226 IPFIRYRYPTLIRVDGA 176
           +PFI+  Y T+I+++GA
Sbjct: 352 LPFIKDIYETVIKLEGA 368


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 226 IPFIRYRYPTLIRVDGA 176
           +PFI+  Y T+I+++GA
Sbjct: 58  LPFIKDIYETVIKLEGA 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 312 SAAHETGYVYHVEESWH 262
           SAA ++GY+ + +  WH
Sbjct: 335 SAAIDSGYILNNDGKWH 351


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 312 SAAHETGYVYHVEESWH 262
           SAA ++GY+ + +  WH
Sbjct: 335 SAAIDSGYILNNDGKWH 351


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 400 EDVIHVDGDVNPVRDLETIAEELRLKDEEQLL 495
           ED+ H++   N    ++T+  E  + + EQ+L
Sbjct: 219 EDIKHINTRHNTKNGMKTLLSETDIWEVEQIL 250


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 454 IAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRLFLVDEKKHIRF 618
           +A +L LK  E LL +   + +   +  +R ++   I W K +  +V+EK  +R+
Sbjct: 4   LASQL-LKSRESLLSNA--YKQGFCQPTQRTMS--KIQWRKPKPAMVEEKTQLRY 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,106
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)