Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20095
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    43   5e-05
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   3.6  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   3.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   6.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.3  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
 Frame = +3

Query: 327 NAVAELKRPNFVLILTDD---QDVVLGGMDPMT-NVQRFIGKEGITFTNSYVTSPICCPS 494
           N  AE K+PNF++I+ DD    DV   G +  T N++R + KEG+  TN + T+  C P+
Sbjct: 4   NKQAESKKPNFLVIVADDLGWSDVSPFGSEIHTPNIER-LAKEGVRLTN-FHTASACSPT 61

Query: 495 RASLL 509
           R+ LL
Sbjct: 62  RSMLL 66


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = -1

Query: 670 YHTDSNIPRIERVISGFLKYSSERLFLVIFPVLSIASAVKTIVHG 536
           ++  +NIP++   +  +      R+ + + PVL  A+++  ++ G
Sbjct: 179 FYQFANIPKLPSHVLSYHSLIPRRMIVTVLPVLRYATSIYKVIDG 223


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 107 AKKGVVAFVKDFYYDPFKWSLVKSVGFFTVGVVIASECTG 226
           A  G+V  + D+ +   KWS +        G+V A+ C G
Sbjct: 280 AVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAG 319


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 35  SSGIIELSQV-IVSKKQLPLFELIMAKKGVVAFVKDFYYDPFKWSLVKSVGF-FTVGVVI 208
           SS +IE+ +   +S  Q  L+E  +        + DFY  P  WS    +       V +
Sbjct: 126 SSLVIEVEENGHLSNMQGSLYETPLRILDAPGLLDDFYISPLAWSTNGELAVALAQNVYL 185

Query: 209 ASECTGLEIMPAMP 250
            SE +G  IM   P
Sbjct: 186 WSEISGPSIMELSP 199


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 475 HRYAVQVEPVCYRHVRSQP 531
           HRYA  +  V + HV+S P
Sbjct: 512 HRYAASISSVPFSHVKSPP 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,695
Number of Sequences: 5004
Number of extensions: 66014
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)