Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20095
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0445 - 21316412-21317162,21317253-21317385,21317634-213177...    29   4.9  
08_01_0203 + 1639993-1641141                                           28   8.6  

>05_04_0445 -
           21316412-21317162,21317253-21317385,21317634-21317721,
           21317873-21318238
          Length = 445

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 716 SVQPGGTTSGPPASLVPY*FKYSPHRTCHIRLPEV**RT---SVSRDISSSLHS 564
           SV+PGG   G P  +VP  F+ S   T       +  R+   S SRD SS+  S
Sbjct: 273 SVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFS 326


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 661 DSNIPRIERVISGFLKYSSERLFLVIFPVLSIASAVKTIVHGLVVVNVHACSKL 500
           D     I  ++    +Y  ERL L+   +L  + AV T+   L + + H C KL
Sbjct: 269 DDKAQMIMHLLEAADRYDVERLKLICELMLCKSIAVDTVAATLAMADQHHCQKL 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,909,911
Number of Sequences: 37544
Number of extensions: 405631
Number of successful extensions: 878
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)