Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20095
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    27   0.14 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.18 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 441 EGITFTNSYVTSPICCPSRASLLQACTFTTTRP*TIVFTADAMER 575
           E IT  NS  +SP   P RA+L Q   FTT  P  I    D   R
Sbjct: 406 ESITSVNS-TSSPKPFPRRATLAQLHNFTTMTPQEIAQWIDRRSR 449


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 56  SQVIVSKKQLPLF----ELIMAKKGVVAFVKDFY 145
           S+ +V  K +P F    +LI+ KK    FVKD Y
Sbjct: 31  SRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIY 64


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 472 RHRYAVQVEPVCYRHVRSQPQD 537
           RHRY  Q++P    H    P+D
Sbjct: 55  RHRYNFQLKPYNPEHKPPGPKD 76


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 625 GFLKYSSERLFLVIFPVLSI 566
           GF+    +RLFL IF + SI
Sbjct: 479 GFVAMVLDRLFLWIFTIASI 498


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 472 RHRYAVQVEPVCYRHVRSQPQD 537
           RHRY  Q++P    H    P+D
Sbjct: 56  RHRYNFQLKPYNPEHKPPGPKD 77


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 508 YRHVRSQPQDREQ*SSRRMLWRELEISRETDVRYYTSGSRI 630
           +R++  +  +R   S  RM+  E        ++YY SGS +
Sbjct: 271 WRNLMDEHSNRTN-SDPRMILTEAYTEFNLTIKYYKSGSTV 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,411
Number of Sequences: 438
Number of extensions: 5381
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)