Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20094
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   1.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   3.9  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    24   5.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   6.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   6.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    24   6.8  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    23   9.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    23   9.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    23   9.0  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 160 EILFLWTDCDLHLQNHGSVVGEVA 89
           + L++WTDCD   ++ G  +  VA
Sbjct: 110 QYLYIWTDCDREGEHIGVEISNVA 133


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  CRSPVKIKNTIVMDDDWDDSCE 78
           C S   I +  +  DDWDDSC+
Sbjct: 328 CNSLPDINSDFI--DDWDDSCD 347


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 25  VKIKNTIVMDDDWDDSCEAV 84
           ++IK+TI++DD ++D  + V
Sbjct: 161 IRIKHTIILDDPFEDPPDLV 180


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 58  HHPLQWYFLFSLDF 17
           HHPL W  ++ L F
Sbjct: 708 HHPLHWLLVYLLSF 721


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 52  DDDWDDSCEAVVVPPPPLQNHDSVDE 129
           D  + D  E +  PP  LQ  +S+DE
Sbjct: 606 DPTYSDEEEVLFAPPGDLQLSESIDE 631


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 61  WDDSCEAVVVPPPPLQNHDSVDEG 132
           W+     + +PPPP  +H +   G
Sbjct: 38  WECPVRGLTIPPPPSVDHSAPPSG 61


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 133 HSLSRGRGFPSFNEDDEK 186
           +SL RG  FPS N D+++
Sbjct: 197 NSLLRGVSFPSLNNDNQE 214


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 100 PLQNHDSVDEGHSLSR 147
           PL +HD VD+  SLS+
Sbjct: 256 PLMSHDQVDDTASLSK 271


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 319  TPIIMVTISLIVAVLFS*PSTS 254
            TP+IMV    IVA L S P TS
Sbjct: 1068 TPVIMVQALEIVAFLCSCPLTS 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,424
Number of Sequences: 5004
Number of extensions: 17477
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)