Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20094
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0382 + 20796567-20796810,20796894-20797750 30 0.38
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 1.2
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 1.5
10_07_0059 + 12475452-12475785,12475889-12476523 27 2.7
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 3.6
03_01_0282 + 2181598-2183124 27 3.6
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 27 3.6
06_03_1375 + 29681045-29681395 27 4.7
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 26 6.2
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 26 6.2
01_03_0029 - 11784446-11784756,11785295-11786576 26 6.2
11_06_0126 - 20378611-20379719,20380081-20381239 26 8.3
03_06_0610 + 35052455-35053429,35054936-35055511 26 8.3
01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985 26 8.3
>05_04_0382 + 20796567-20796810,20796894-20797750
Length = 366
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 82 VVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKEN 192
V PPPP+ +V G +SRG G P +NE +N
Sbjct: 325 VAAPPPPMMPV-AVRSGRPVSRGGGAPPYNEMHTPKN 360
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 43 IVMDDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPSF-NEDDEKENGYG 201
+ DDD D +PP P+ N S G + G G P+ N+ +G G
Sbjct: 155 VASDDDDDKQASRRALPPMPVLNLSSDSSGDAAGAGAGEPTQPNKASRSSSGGG 208
>03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 VMDDDWDDSCEAVVVPPPPLQNHDSVDE--GHSLSRGRGFPSFNED 177
++D W+ + +A + PPPP + +SVDE G +S F ED
Sbjct: 1032 LLDGLWN-TVQAWLAPPPPTDSPNSVDELIGRDMSMSPWNGPFRED 1076
>10_07_0059 + 12475452-12475785,12475889-12476523
Length = 322
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 37 NTIVMDDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRG 156
+ +V DDD +D VV+PPPP E H R RG
Sbjct: 84 DVVVDDDDSEDG--VVVLPPPPPPPPVIPHERHGARRFRG 121
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 70 SCEAVVVPPPPLQNHDSVDEGHSLSR 147
S EA V+PPP L+ HDS E L R
Sbjct: 693 SVEARVLPPPRLKYHDSGREKDVLPR 718
>03_01_0282 + 2181598-2183124
Length = 508
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 38 IPL*WMMTGMIPVKLLWC-HLPHYRTMIL 121
IPL W + GM+P L C HL + T +L
Sbjct: 35 IPLQWPLVGMLPALLANCNHLHEWITSVL 63
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 52 DDDWDDSCEAVVVPPPP 102
DDD DSC + PPPP
Sbjct: 144 DDDDTDSCSTPLPPPPP 160
>06_03_1375 + 29681045-29681395
Length = 116
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +1
Query: 19 SPVKIKNTIVMDDDWDDSCEAVVVP---PPP 102
+PVK K V D W DS +A VP PPP
Sbjct: 72 TPVKAKQGHVRDSHWSDS-DAFAVPEFSPPP 101
>07_03_1652 -
28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 93 WHHNSFTGIIPVIIHYNGIFYFH 25
W + +I +I+YNGI +FH
Sbjct: 361 WTGPTSMSVINFLIYYNGIMFFH 383
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 70 SCEAVVVPPPPLQNHDSVDEGHSLSR 147
S EA V+PPP L+ HDS E L R
Sbjct: 576 SVEARVLPPPWLKYHDSGREKDVLPR 601
>01_03_0029 - 11784446-11784756,11785295-11786576
Length = 530
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +1
Query: 52 DDDWDDSCEAVV-----VPPPPLQNHDSVDEGHSLSR 147
DDD DD E VV PPPP + +E +L R
Sbjct: 74 DDDDDDDDEKVVPPPTPTPPPPQAPEEEEEEARALRR 110
>11_06_0126 - 20378611-20379719,20380081-20381239
Length = 755
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 106 VVGEVAPQQLHRNHPSH 56
+VGE++PQ LH +H H
Sbjct: 99 LVGEISPQLLHLDHIEH 115
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 64 DDSCEAVVVPPPPLQNHD 117
DD C+ ++ P PP HD
Sbjct: 493 DDECKRLIAPLPPPDGHD 510
>01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985
Length = 331
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 19 SPVKIKNTIVMDDDWDDSCEAVVVPPPPLQNHDSVDEG 132
+P+ K+ ++DD DD A PP P+ D+G
Sbjct: 74 APLTTKSWADVEDDDDDDYFATTAPPRPVWGTGHGDDG 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,604,532
Number of Sequences: 37544
Number of extensions: 128030
Number of successful extensions: 642
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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