Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20094
(331 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.098
SB_45299| Best HMM Match : AIG2 (HMM E-Value=1.7) 31 0.23
SB_7238| Best HMM Match : rve (HMM E-Value=0.0017) 31 0.23
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.40
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_19747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 27 3.7
SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0) 27 4.9
SB_42948| Best HMM Match : FtsX (HMM E-Value=0.26) 26 6.5
SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44) 26 6.5
SB_43337| Best HMM Match : RNA_pol_delta (HMM E-Value=8.5) 26 8.5
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 32.3 bits (70), Expect = 0.098
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 162 RKSSSSGQTVTFIYRIMVL*WGRWHHNSFTGIIP 61
R++ + Q V F+ RI+ W RWH + F ++P
Sbjct: 567 RETPNPRQRVEFVQRIVESFWKRWHRDVFPALVP 600
>SB_45299| Best HMM Match : AIG2 (HMM E-Value=1.7)
Length = 162
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 162 RKSSSSGQTVTFIYRIMVL*WGRWHHNSFTGIIP 61
R++ + Q V F+ RI+ W RWH + F ++P
Sbjct: 64 RETPNPRQRVEFVQRIVESFWKRWHRDVFPVLVP 97
>SB_7238| Best HMM Match : rve (HMM E-Value=0.0017)
Length = 367
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 162 RKSSSSGQTVTFIYRIMVL*WGRWHHNSFTGIIP 61
R++ + Q V F+ RI+ W RWH + F ++P
Sbjct: 269 RETPNPRQRVEFVQRIVESFWKRWHRDVFPVLVP 302
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 141 QTVTFIYRIMVL*WGRWHHNSFTGIIP 61
Q V F+ RI+ W RWH + F ++P
Sbjct: 1454 QRVEFVQRIVESFWKRWHRDVFPALLP 1480
>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 37 NTIVMDDDWDDSCEAVVVPPPPLQNH 114
N + D D+ + E V+ PPPPL+ H
Sbjct: 125 NRSIHDHDYHWAIENVIPPPPPLEGH 150
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 67 DSCEAVVVPPPPLQNHDSVDEGHS 138
DS EA PPPPL + DEG S
Sbjct: 466 DSSEAFPPPPPPLAETNEFDEGIS 489
>SB_19747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 55 DDWDDSCEAVVVPPPP 102
DD D+SC VPPPP
Sbjct: 84 DDSDESCSTWKVPPPP 99
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 55 DDWDDSCEAVVVPPPP 102
DD D+SC VPPPP
Sbjct: 681 DDSDESCSTWKVPPPP 696
>SB_22540| Best HMM Match : Glyco_transf_54 (HMM E-Value=0)
Length = 352
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 82 VVVPPPPLQNHDSVDEGHSLSRG 150
VV P PL+ ++V+ GH L +G
Sbjct: 42 VVFKPSPLEKENNVETGHYLEKG 64
>SB_42948| Best HMM Match : FtsX (HMM E-Value=0.26)
Length = 469
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 64 DDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKENGYG 201
D C P P ++ + +G +SR S ++D NGYG
Sbjct: 125 DGDCANRYGPGPNCNDYGTNRDGDGVSRNGNDASRSDDGANHNGYG 170
>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
Length = 587
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 7 ERCRSPVKIKNTIVMDDDWDDSCEAVVVPPPPLQNHD 117
+RC P+K+ N+I D D+ + P PP D
Sbjct: 23 QRCYQPLKVHNSITSVD--TDTLAELTAPLPPFATKD 57
>SB_43337| Best HMM Match : RNA_pol_delta (HMM E-Value=8.5)
Length = 121
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 43 IVMDDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDE 183
IV DDD DD CE+ + D D+G G G + DD+
Sbjct: 76 IVCDDDSDDDCESDDDGESD-NDGDGDDDGDGDDDGEGDDDSDSDDD 121
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 91 PPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKENG 195
PPPP ++ S D S RG G P DD + G
Sbjct: 81 PPPPRRDEKSYDYDDSWDRGPGRP---HDDRYDYG 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,621,530
Number of Sequences: 59808
Number of extensions: 144160
Number of successful extensions: 448
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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