Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20094
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    28   1.7  
At5g01380.1 68418.m00051 expressed protein                             27   3.0  
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    27   3.0  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    27   4.0  
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont...    27   4.0  
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    26   5.3  
At2g42510.1 68415.m05261 spliceosome protein-related contains Pf...    26   7.0  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    26   7.0  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    26   7.0  
At2g48160.1 68415.m06031 PWWP domain-containing protein                25   9.3  
At2g20760.1 68415.m02440 expressed protein                             25   9.3  
At1g35770.1 68414.m04447 Ulp1 protease family protein contains P...    25   9.3  

>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 34  KNTIVMDDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKENG 195
           +N    + D DD  E  +VPP   Q   S   G   +RGR  P    DD   +G
Sbjct: 460 RNNPFPNSDGDDDFE--IVPPLRSQTRRSTRLGKQANRGRQVPEGARDDNFVDG 511


>At5g01380.1 68418.m00051 expressed protein 
          Length = 323

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 88  VPPPPLQNHDSVDEGHSLSRGRGFPSFNEDDEKE 189
           +PPPPL    ++D G     G   P ++ ++ KE
Sbjct: 26  LPPPPLSTTATMDPGGGGGGGERIPQWSIEETKE 59


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 19  SPV-KIKNTIVMDDDW-DDSCEAVVVPPPPLQNHDSVDEGHSLSRGRG 156
           SPV K  N+IV+ D   D++CE+      P  NH  V + +S   G G
Sbjct: 337 SPVAKPDNSIVLIDMLSDNNCESSTPTSNPHANHQKVQQNYSNGFGPG 384


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 151 FLWTDCDLHLQNHGSVVGEVAPQQLHRNHPSHHPLQWYFLFSLDFDNAR 5
           + WT  DLHL     +       +LH   PS  PL W   + +    A+
Sbjct: 790 YFWTP-DLHLLVSEYIPNGNLQSKLHEREPSTPPLSWDVRYKIILGTAK 837


>At1g73070.1 68414.m08449 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to receptor-like
           protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 598

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 156 SSSSGQTVTFIYRIMVL*WGRWHHNSFTGIIP 61
           +S +G+    ++RI VL +    HN+ TG+IP
Sbjct: 155 NSLTGELPKSLFRIPVLNYLHVEHNNLTGLIP 186


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 70  SCEAVVVPPPPLQNHDSVDE 129
           S EA V+PPP L+ HDS  E
Sbjct: 529 SIEARVLPPPMLKYHDSGKE 548


>At2g42510.1 68415.m05261 spliceosome protein-related contains Pfam
           domain, PF04938: Survival motor neuron (SMN) interacting
           protein 1 (SIP1)
          Length = 646

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 34  KNTIVMDDDWDDSCEAVVVPPPPLQNHDSVDE 129
           K +I  D+  +DS +  +V  PP++N DSV+E
Sbjct: 15  KTSISRDEFAEDSLK--IVSLPPVENDDSVEE 44


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1050

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 70  SCEAVVVPPPPLQNHDSVDEGHSL 141
           S EA ++PPP L+ H+S  EG  L
Sbjct: 562 SVEARILPPPWLKYHESGREGTCL 585


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1048

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 70  SCEAVVVPPPPLQNHDSVDEGHSL 141
           S EA ++PPP L+ H+S  EG  L
Sbjct: 560 SVEARILPPPWLKYHESGREGTCL 583


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 91   PPPPLQNHDSVDE-GHSLSRGRGFPSFN 171
            PPPP Q+  S  E GH L   R  PS++
Sbjct: 1239 PPPPPQHQFSFREPGHVLKSHRDAPSYS 1266


>At2g20760.1 68415.m02440 expressed protein
          Length = 338

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 154 GFPSFNEDDEKENGYG 201
           GF SFN D    NGYG
Sbjct: 42  GFSSFNGDPASPNGYG 57


>At1g35770.1 68414.m04447 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 968

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 52  DDDWDDSCEAVVVPPPPLQNHDSVDEGHSLSRGRGFPS 165
           + D D++     +PPP   + D+ + G++      FPS
Sbjct: 509 NSDGDNNVATGSIPPPQAVSRDNTECGNNTPNDEDFPS 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,030,164
Number of Sequences: 28952
Number of extensions: 100907
Number of successful extensions: 392
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)