Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20093
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   2.5  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   4.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   7.6  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   10.0 

>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 173 QTNQILYTVKSKTE*YVKN 229
           Q NQ+LY V S+ + YVKN
Sbjct: 431 QVNQVLYDVSSQEDAYVKN 449


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 8   RNEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTLKE 115
           + +++   PGPG+  L+QR    ++  K + + L++
Sbjct: 46  QQKIANTRPGPGQTALKQRAMNVLRQKKIYESQLQQ 81


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 111 LRVVENRFEYFTNSLFLCSNTCFPGPGVYVDTSFL 7
           L +V   F  F+   FLC    FPG  +Y    FL
Sbjct: 351 LEIVGAVFFIFSLFFFLCMRNFFPGFTIYFPALFL 385


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 495 KNNELELDFFKFNYHIQSKPFTATSFR 575
           KN E EL+F K  + I SK +   S+R
Sbjct: 125 KNYERELEFTKKMFEIDSKNYHVWSYR 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,775
Number of Sequences: 5004
Number of extensions: 49124
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)