Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20093
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524...    34   0.090
02_05_0772 - 31643142-31643329,31643650-31643683,31644037-316442...    31   1.1  

>01_06_0916 + 32950575-32950656,32952061-32952272,32952408-32952448,
            32952916-32952959,32953259-32953561,32954145-32954302,
            32954849-32954965,32955562-32955747,32955872-32956031,
            32956079-32956151,32958613-32958889,32959024-32959099,
            32960653-32960720,32961270-32961361,32961505-32961578,
            32961777-32961820,32962155-32962206,32962585-32962704,
            32962777-32962889,32963023-32963110,32963492-32963577,
            32964172-32964258,32964491-32964594,32964996-32965098,
            32965250-32965345,32965456-32965645,32965777-32965838,
            32966014-32966118,32966782-32966983,32967092-32967300,
            32968510-32968673,32968799-32968850,32968935-32969021,
            32969319-32969441,32969567-32969605,32969606-32969860
          Length = 1447

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = -1

Query: 313  FLFNNIGINESNFLVSSLQDAIESTSISIFHILLSLALYCIQYLICLMNQIKSAHK 146
            ++  NI  NE+  +V  ++D I +T  S+F   +S + Y I+ +I L N++K  H+
Sbjct: 1136 YIHGNIEPNEATSIVQEIEDTIFNTPNSVFK-SMSPSQYLIKRVIMLENELKCYHQ 1190


>02_05_0772 -
           31643142-31643329,31643650-31643683,31644037-31644221,
           31644483-31645146
          Length = 356

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 325 KSVFFLFNNIGINES---NFLVSSLQDAIESTSISIFHILLSLALYC 194
           +S+F    N+ I ES   NFL+S L    +  ++  F  LLSL+L+C
Sbjct: 266 RSLFLHTENVLIRESAQLNFLLSKLLPNFDEIALIFFLHLLSLSLFC 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,568
Number of Sequences: 37544
Number of extensions: 236461
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)