Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20093
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               31   0.008
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   4.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 23/97 (23%), Positives = 41/97 (42%)
 Frame = +2

Query: 8   RNEVSTYTPGPGKQVLEQRKREFVKYSKRFSTTLKEYFKEGQANAVFVSALYLIHQTNQI 187
           R  +  Y P  G +V E++K + +   K   T L ++ K+G    V     Y+    +Q+
Sbjct: 196 RGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDG--GTVKKKVNYVYRSVDQV 253

Query: 188 LYTVKSKTE*YVKNGNRC*FYGVLQRTY*KITLINAY 298
           L   K K    V+  N      V+  T  +  +++ Y
Sbjct: 254 LEDGKLKPNKKVRISNEMSKVKVIDMTGPEQRILSGY 290


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 461 HQDNYSSNIKSAFLFIIKNSIFPIPLNI 378
           + +NY++N K  +  II     P+P+ +
Sbjct: 343 YNNNYNNNCKKLYYNIINIEQIPVPVPV 370


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 301 NIGINESNFLVSSLQD 254
           NIGIN+  FL+  L+D
Sbjct: 64  NIGINKWRFLLQCLED 79


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 455 DNYSSNIKSAFLFIIKNSIFPIPLNI 378
           +NY++N K  +  II     P+P+ I
Sbjct: 325 NNYNNNYKPLYYNIINIEQIPVPVPI 350


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 470 LREHQDNYSSNIKSAFLFIIKNSIFPIPLNILKC 369
           + + + +Y  N+    ++ I N  +P+P +  KC
Sbjct: 37  VNKEECDYYQNLNLGEIYYIYNPRYPLPYSGSKC 70


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 526 NLIIIYSQNRLLRHRLEQHTGYNNLEQRS 612
           N +IIY       HRL  HT  +N ++ S
Sbjct: 209 NTLIIYQNADDSFHRLSSHTLNHNSDKMS 237


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 294 PMLLNKKKTLFHH 332
           P L N+K  +FHH
Sbjct: 110 PELTNRKSVVFHH 122


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 394 GKMLFLIMNKKADFM 438
           G ++F+ M KKADF+
Sbjct: 453 GTLVFVEMKKKADFI 467


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 24  HILQVLGSKY*NRGKENL*NIQSDFLLLSKNTLKKD 131
           H ++ +  KY N     L   +S FLLL+   L KD
Sbjct: 58  HFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIKD 93


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 38  PGKQVLEQRKREFVKYSKRFSTTLKEYFKEGQANAVFVSALYLIHQTNQILYTVK 202
           PG  +    K   +     +S TL  ++++G+  + F+S +    ++ Q ++ VK
Sbjct: 314 PGTGINVTLKGYCIDMEVPYSGTLISHYEDGETKSRFISGI----RSEQTIFDVK 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,334
Number of Sequences: 438
Number of extensions: 3498
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)