Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20092
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   3.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.3  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.7  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 641 SFPPIVLLGVLSKSFTTCS 585
           S+ PIV  G++   F TC+
Sbjct: 160 SYCPIVTTGIIKIQFATCA 178


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 350 ESIDKVMAAGEHTINNKKVDPKKAKARHG 436
           E I +   +  H+++N     KK+  +HG
Sbjct: 242 ELIRQTHKSPSHSVDNSNSSEKKSSIQHG 270


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 586 EQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 678
           +++  + L  P R   GKE+ +K    K DG
Sbjct: 50  DKIRYESLTNPSRLDSGKELYIKIIPNKNDG 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,800
Number of Sequences: 336
Number of extensions: 3480
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)