Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20092
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 72 5e-13
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 59 3e-09
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 54 8e-08
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 52 3e-07
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 46 4e-05
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 45 5e-05
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 0.001
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.010
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.010
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 35 0.073
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.096
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 33 0.22
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.22
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.29
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.39
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 32 0.39
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.90
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.90
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34) 30 1.6
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 30 2.1
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34) 29 2.7
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 29 2.7
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 29 3.6
SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 29 4.8
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2) 29 4.8
SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 6.3
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 28 6.3
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017) 28 6.3
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 28 8.4
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 8.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 28 8.4
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +GE++ V DP T RSRGF F+ FK P+++D V+ +G +++D KK
Sbjct: 128 FEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGA-----QELDGKKMVTTT 182
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
KIF+GGLS+ S+++++ +FS+FG
Sbjct: 183 KKIFIGGLSTNTSEEDMKKYFSQFG 207
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/83 (39%), Positives = 43/83 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F YGE+ +++K D TGR RGFAF+ FK D + I K R
Sbjct: 49 FSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAIDPKPAAPIG------KPPHLRV 102
Query: 434 GKIFVGGLSSEISDDEIRNFFSE 502
KIFVGGL E SD++IR +F +
Sbjct: 103 KKIFVGGLKPETSDEKIREYFGK 125
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
+ E+E + + N+R+GFCF++F+SE V+ + +T I G +V+VKRA PK
Sbjct: 130 VKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPK 182
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 FG-AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
FG AY ++ I T+ ++ R RGF F+ F + +++DK+ H I KV+ K+A
Sbjct: 123 FGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRA 179
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 144 GDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDH 254
G S D N DD KLFVGGLS+ETT + L+++
Sbjct: 12 GTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEY 48
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFG 508
GK+FVGGLS E + + ++ +FS++G
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSKYG 53
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +3
Query: 195 RKLFVGGLSWETTDKELRDH 254
+K+FVGGL ET+D+++R++
Sbjct: 103 KKIFVGGLKPETSDEKIREY 122
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD-----PKK 418
F +GEI+ VK DPNT RSRGF F+ FK E V++ H I + + PK+
Sbjct: 135 FTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST-SHRIQGRLCEVRLPRPKE 193
Query: 419 AKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
K+FVG L ++ + +F++FG
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFG 223
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/94 (29%), Positives = 59/94 (62%), Gaps = 12/94 (12%)
Frame = +2
Query: 254 FGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK---- 418
F +G I + + +K D GRSRGF F+ +++ +S+++V+ +H +++++++PK+
Sbjct: 70 FSQWGTIVDCVIMKRD---GRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPR 126
Query: 419 -------AKARHGKIFVGGLSSEISDDEIRNFFS 499
A ++ KIFVGGL+S +++I+ +F+
Sbjct: 127 DESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFN 160
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 266 GEIESINVKTD-PNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 424
GE+ +++K D N R RGFAF+ F E ++KV A H I K+ + KKA+
Sbjct: 169 GEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAE 222
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 538 KTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 675
K + +GF F+T+ES VN++LK + +E++ KR+ P+ +
Sbjct: 83 KRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDE 128
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQR-KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
+++V++ D+ +R +GF F+TF+++++V + I K+ +VK+A P+
Sbjct: 171 VIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQ 224
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +3
Query: 195 RKLFVGGLSWETTDKELRDH 254
RK+F+GGL+W TT++ L+D+
Sbjct: 50 RKIFIGGLNWNTTEEGLKDY 69
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
KIF+GGL+ +++ ++++FS++G
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWG 74
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +GE+ES+ + G SR + F++FK + K + H IN K VD K++
Sbjct: 100 FEQFGEVESVRIMRT-FLGYSRNYGFVLFK-DDGPSKEVLKKSHVINGKTVDVGKSR-NF 156
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFGL 511
I+VGGL S ++ +R F +FG+
Sbjct: 157 RVIYVGGLPSHFTEQTVREHFKKFGV 182
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 406
F YG++ +++ TD TG+S+G + + P +++K++ H I +V
Sbjct: 339 FRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVIGKSQV 389
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 392 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
N+ PK + +FVGGL+S ++ ++++F +FG
Sbjct: 66 NSTLPSPKDIEKNSRSVFVGGLASGTDEEGLKDYFEQFG 104
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 21/86 (24%)
Frame = +2
Query: 317 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---------------------KARH 433
+GF F+ F+ P +I+ V+A H ++ K +DPK A A
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSAND 201
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFGL 511
GK+F+GGL+ ++++++ +FS +G+
Sbjct: 202 GKVFIGGLAFGTTEEDLKEYFSTYGM 227
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 684
F++ KGF F+TF + +L + GK +D K A P+ GPG
Sbjct: 134 FERRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPR--GPG 182
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 180 GRDDDRKLFVGGLSWETTDKELRDH 254
G +D K+F+GGL++ TT+++L+++
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLKEY 221
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNK--KVD---PK 415
FG G + S + D TG+S G+AF+ + P+ +K V + NK KV P
Sbjct: 47 FGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPS 106
Query: 416 KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ ++ +++ GL ++ ++E+ F FG
Sbjct: 107 STEIKNANLYISGLPKDMKEEEVEALFKPFG 137
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2
Query: 296 DPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 430
D T R RGF F+ F++ S DK H INNKKV+ KKA+ +
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
FDK + +GF F+TFESE + T I K+V+VK+A PK
Sbjct: 4 FDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPK 49
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +2
Query: 305 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEI 484
+G+S+GFAF+ + E+++ V+ +H I+N V +K + + K+ + + S I + +I
Sbjct: 79 SGKSKGFAFVRLRKKEAVESVLGRDDHVIDNSDVSMEK-QDTYRKVILKNIPSSIGESQI 137
Query: 485 RNFFSEFG 508
FS G
Sbjct: 138 LEHFSSSG 145
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEV 645
I V +P + +RKG C +TF S +++K K I G ++
Sbjct: 147 IASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKRKHHIHGYDI 191
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 44.8 bits (101), Expect = 7e-05
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 15/93 (16%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF---KAPESI--DKVMAAGEHTINNKKVDPKK 418
F AYGE+ + V D T +SRGF ++ F K ++ DKV G H I+ K+V+ K+
Sbjct: 34 FEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKV-ENGAHRIDGKEVEVKR 92
Query: 419 AKARHG----------KIFVGGLSSEISDDEIR 487
A R KIFVGGL + + ++I+
Sbjct: 93 AIPRDDNSATSHEKTKKIFVGGLPEDATKEDIQ 125
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT----IGGKEVDVKRATPKPD 675
+ +V + D + +GF ++TF +V ++LK I GKEV+VKRA P+ D
Sbjct: 40 LTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPRDD 98
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
D+TK+ +GF F+ +E ++L K + GK V+ K+ATP+
Sbjct: 147 DETKH--RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPR 189
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 186 DDDRKLFVGGLSWETTDKELRDHLE 260
D KLFVGGL+ ETT++ LR++ E
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFE 35
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGGL+ E +++ +R +F +G
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYG 38
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Frame = +3
Query: 87 FAQDITTDNQLNGNAENGGG--DSQDHNSAXAPGRDDD--------RKLFVGGLSWETTD 236
FA T N L ENG D ++ A RDD+ +K+FVGGL + T
Sbjct: 62 FADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIPRDDNSATSHEKTKKIFVGGLPEDATK 121
Query: 237 KELRDHLEHTVK*RV 281
+++++ +E ++ +V
Sbjct: 122 EDIQEAIESLLEEKV 136
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 514 LEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIR 693
LE++M D+ N+ KG+CF+ F +E +V+ L + GK+V++K+A G G R
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKAADLGAGGRGGR 192
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Frame = +2
Query: 257 GAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAAGE-HTINNKKVDPKKAKAR 430
G+ ++ S+++ P G+SR F F+ F + ID ++ E H+I+NK+V+ K+A R
Sbjct: 34 GSEADVSSVSLAKTPE-GKSRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPR 92
Query: 431 HG----------KIFVGGLSSEISDDEIR 487
K+F+GGL E S+++++
Sbjct: 93 DDPNELAHVRTKKLFIGGLKDEHSEEDVK 121
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEF 505
K+FVGGL+ + +++ +R +F F
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSF 31
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 281 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 421
I + D T + +G+ F+ F +DK+ + K V+ KKA
Sbjct: 135 IKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----AKAR- 430
GEI ++ DP TG ++GFAF F S + + T+N+K + P + K+R
Sbjct: 177 GEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAIT----TLNDKDIRPGRRLAICKSRS 232
Query: 431 HGKIFVGGLSSEISDDEIRNFFSE 502
+ ++FV G+ S +EI FS+
Sbjct: 233 NSRLFVKGIPKRKSKEEIFQEFSK 256
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--DPK 415
FG YG IE +++ TG+S+GF ++ ++ ES + + AG H I+ K V +PK
Sbjct: 83 FGPYGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRAL-AGTHIIDGKWVIAEPK 136
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 439
G+I S+ V TDP G+S+GF F+ F+ PE ++ + + +N K++ ++ A K
Sbjct: 133 GKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAV----NVLNGKEIGGRRLWAGRAK 185
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F YG I S V D + G S+GF F+ F +PE K +
Sbjct: 232 FSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAV 269
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F YG ++++++ TD SRGFA++ + PE +K +
Sbjct: 1177 FSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKAL 1215
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 VEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATP 666
V++P D+T N +GF ++ + + E+ L I G+E+ V+ P
Sbjct: 1186 VDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLP 1235
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 275 ESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
E++N+ TD TGR RGF F+ F + E ++K +
Sbjct: 123 EAVNIITDRETGRPRGFGFVTFGSKEEMEKAI 154
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 535 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 687
D+ + +GF F+TF S E++ + + + + G+ + V A P+ D GG
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGDSGGG 181
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESI 358
G +E++ + TD NTG+ R F F+ F +P S+
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSV 511
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -3
Query: 381 SPAAMTLSIDSGALNTMKANPRDLPVFGSVFTLILSISPYAPNDHGAPYLWSPSSAHQQ 205
SP A++ +D G +A +++P F TL L + P+A G P ++PSS H++
Sbjct: 371 SPDALSKGLDMGWGALSRAGVQEMPAFP---TLRLPLHPFASTGFGTPAFYNPSSYHRE 426
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.055
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 278 SINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
S+ V TD TGR RGF F+ F + + +DK +
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAI 67
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGPGG 687
+L V++ D+ + +GF F+TF SE ++ + K + G+ + V +A P+ + GG
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGERGGG 94
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 505 WTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGP 681
+ +++V++ D+ + +GF F+TF S++ + D + + + G+ + V +A +
Sbjct: 253 YDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQRG 312
Query: 682 GG 687
GG
Sbjct: 313 GG 314
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV---MAAGEHTINNKKVDPKKAK 424
F Y ++ + V +D T R RGFAF+ F + ++++ + E + KV+ +++
Sbjct: 250 FSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSR 308
Query: 425 ARHGKIFVGGLSS 463
+ G GG S
Sbjct: 309 EQRGGGRGGGYRS 321
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
K+FVGG+ E DD +R FF++FG
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFG 34
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 269 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
++ + V TD TGR RGF F+ F + E ++K +
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAI 62
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPD-GPG 684
+++V++ D+ + +GF F+TF S E++ + + + G+ + V +A P+ + G G
Sbjct: 30 VVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGAG 89
Query: 685 GIR 693
G R
Sbjct: 90 GSR 92
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK----- 418
F G I + DP +G ++GFAF F + + ++NK++ P K
Sbjct: 172 FEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAV----KKLDNKEIRPGKRLGVC 227
Query: 419 AKARHGKIFVGGLSSEISDDEIRNFFSE 502
+ ++FVG + S EI FS+
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSK 255
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 517 EVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDVKRATPK 669
EV + D KN+ KGF F++F E + + TIGGK+V A K
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARK 592
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Frame = +2
Query: 281 INVKTDPNTGRSRGFAFIVF-------KAPESIDKVMAAGEHTINN---KKVDPKKAK-- 424
+ V DP +S+GF F+ F KA +D V G+ N +K +P + K
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPL 601
Query: 425 ----------ARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ ++VG L ++ D E++ FS++G
Sbjct: 602 VWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYG 639
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQ 591
I+ V + DK ++KGFCF+ +E ++
Sbjct: 5 IVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F G + V +P G SRGFAF+ + E +K G+ N ++V+ + +
Sbjct: 226 FSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEK----GQRAHNGRQVEGSNIRVAY 281
Query: 434 G 436
G
Sbjct: 282 G 282
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 263 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 355
YGEI ++N+ D TG+ +GF F+ ++ S
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRS 32
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQ 591
I+ V + DK ++KGFCF+ +E ++
Sbjct: 5 IVNVNLVRDKKTGKQKGFCFLCYEDQR 31
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 370
F YG++ I + D NT SRGFAF+ F + M
Sbjct: 36 FKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/103 (21%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGEH-----TIN 394
+F +G I I++ DP + +GFAF+ + PE+ ++ V+ G + N
Sbjct: 121 AFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSN 180
Query: 395 NKKVDP-----KKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ P ++ ++ +I++ + ++ +D+I++ F FG
Sbjct: 181 VPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFG 223
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
F A+G++ ++ +P TG+ +G+ FI ++ +S + +A+
Sbjct: 219 FEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 251 SFGAYGEI-ESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN 394
+F A+G I ++ + D +TG S+GFAFI F + ++ D + A G++ N
Sbjct: 119 TFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCN 169
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +2
Query: 266 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH--- 433
G + ++++ D T +G+ F+ F E D + + K + KA A +
Sbjct: 37 GPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNL 96
Query: 434 ---GKIFVGGLSSEISDDEIRNFFSEFGL 511
+F+G L +E+ + + + FS FG+
Sbjct: 97 DVGANLFIGNLDTEVDEKLLYDTFSAFGV 125
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
F YG++ + + D T SRG AFI+F +S +AA
Sbjct: 30 FERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/75 (18%), Positives = 34/75 (45%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F G +ES+ + D TG +GF +++F++ +++ + +K+ +K +
Sbjct: 76 FTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRKIRVFPSKDKP 135
Query: 434 GKIFVGGLSSEISDD 478
F+ + D+
Sbjct: 136 QTEFISHIQVRFRDN 150
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +3
Query: 78 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRDHL 257
ND+ A D++ ++ + G+ +NGG D+ ++++ D+ ++ D E+ DH+
Sbjct: 180 NDDSASDVSIEDIIYGDDDNGGDDNDNYDNDDDYDGDNYND---ENDDYDHNDVEMADHM 236
Query: 258 EHT 266
+H+
Sbjct: 237 DHS 239
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 358
+F +G +E +++ D +GRSRGF F++ ++ + I
Sbjct: 28 AFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 347 PESI-DKVMAAGEHTIN-NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 508
PE++ D+++ + ++N + D + K+FVGGL +I +DEI F FG
Sbjct: 313 PENLADQIVPSLASSLNCSPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFG 368
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFI---VFKAPESIDKVMAAGEHTINNKKVD 409
F YGEI++++V D TG +G+A + FK +S + + E N VD
Sbjct: 313 FSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.1 bits (67), Expect = 0.90
Identities = 26/112 (23%), Positives = 51/112 (45%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 433
F +G++ +++ + G +GFAFI F++ + + V+ KK + K+ +
Sbjct: 108 FSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKK-EEKREPSID 166
Query: 434 GKIFVGGLSSEISDDEIRNFFSEFGLS*KWRCPLTKQRTKERASVSSHLNLS 589
K + S+ ++ + S+ LS R ++RT SV S+ N S
Sbjct: 167 DKTKIKKRRRSHSESDLES--SKLSLSQSER---KRRRTTSETSVDSNENAS 213
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFESEQ 591
+L V +P K + KGF FI FES+Q
Sbjct: 114 VLYVSLPRFKHNGEIKGFAFIEFESKQ 140
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 376
F +G+I V D T S+G AF+ +++ ES+ + +AA
Sbjct: 436 FKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAA 476
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFG 508
KIF+GGL + +++D+++ S FG
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFG 697
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 260 AYGEIESINVKTDPNTGRSRGFAF 331
++GE+ + N+ D TG S+G+AF
Sbjct: 695 SFGELRAFNLVKDSATGLSKGYAF 718
>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 686 PPGPSGFGVARFTSTSFPPIVLL---GVLSKSFTTCSDSNVMKQKPFLWFFVLSK 531
P G +G G+ R++S S P G +S S+T V ++ FL FFVL K
Sbjct: 383 PIGVNGSGITRYSSLSVPFYCKFSSHGDVSLSYTIKKSVPVWHEEKFLSFFVLYK 437
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKA 421
SF +G + +++K P G+ +AF+ F + K A + N+ K+ ++
Sbjct: 256 SFEKFGVVLDVDIKR-PARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKIGYGRS 314
Query: 422 KARHGKIFVGGLSSEISDDEIRNFFSEFG 508
+ + +++VGGL IS E+ F FG
Sbjct: 315 Q-QTTRLWVGGLGPWISIPELEREFDRFG 342
>SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)
Length = 728
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 315 DLPVFGSVFTLILSISPYAPNDHGAPYLWSPSSAHQQKVFC 193
D PV G+ F L P DH Y W H QK FC
Sbjct: 45 DSPVLGT-FNFRLKGFTNPPTDHYGRYFWIEGDRHIQKGFC 84
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 437 KIFVGGLSSEISDDEIRNFFSEFGL 511
+IFV G + E ++ E+R FF E+G+
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGV 33
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 556 KGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGGIRH 696
KG+ FITFES++V + L K + + +A + RH
Sbjct: 48 KGYAFITFESQEVADGLRDNKGLDFKDKVLSIGQAVRRKSSRSYSRH 94
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDDRKL--------FVGGLSWE 227
NN+N D +DN + N++N ++ D+N+ R D ++ ++ GL+WE
Sbjct: 613 NNNNNNNDNNSDNNSDNNSDNNSDNNSDNNNDNNSERGADPEIKRGKNPEGWIRGLNWE 671
>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
Length = 722
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -3
Query: 393 LMVCSPAAMTLSIDSGALNTMKANPRDLPVF-GSVFTLILSISPYAPNDHGAPYLWSPSS 217
L + P+A++ +I K P LPV G+ +T S N H YLW
Sbjct: 525 LPITFPSAVSGTISPYLDIVNKYTPHGLPVVRGNEYTPHGSPVARGKNTHKTGYLWPRER 584
Query: 216 AHQQKVFCRH 187
H +V C H
Sbjct: 585 IHTTRVTCCH 594
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 511 ILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGKEVDVKRATP 666
I +V++P D T ++ +GF F+ FE +E + + + G+ + V A P
Sbjct: 31 ITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 352
+F +G+I + + D T + RGF F+ F+ E
Sbjct: 24 AFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAE 57
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 517 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 615
+V++ +D + Q KGFCF+T +++ + ++T
Sbjct: 303 KVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335
>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAE-NGGGDSQDHNS 167
NND+ D T D+ N N + NGGG D+N+
Sbjct: 193 NNDDDDDDDTDDDDHNNNDDDNGGGGDDDNNN 224
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 NDNFAQDITTDNQLN-GNAENGGGDSQDHNS 167
+DNF DI+ D LN G A N + ++NS
Sbjct: 335 HDNFNDDISNDGNLNGGGANNNNNKNNNYNS 365
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 532 FDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPKPDGPG 684
FD+ + +GF F+ ++ + +L + + G++V + A+P+ +G G
Sbjct: 319 FDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRTEGGG 370
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 341 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGLS 514
K S + + E T KK P K + +F+G LS + ++ + FF E GLS
Sbjct: 152 KEESSSESDSDSDEETPTPKKTVPAKEEM---SVFLGNLSFDADEETLAAFFEEKGLS 206
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 272 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 409
I+ + K+ N G++ G AF+VFK+ K + I ++ ++
Sbjct: 361 IDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALKMDRSYIGHRYIE 406
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 398 KKVDPK--KAKARHGKIFVGGLSSEISDDEIRNFFSEFGLS*KWRCPLTKQRTKER 559
KK+ PK + + G I++G + ++EI+ FF +FG + R +K+ + +
Sbjct: 84 KKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSK 139
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 385
F +G + I + + RS+G+AF+ F A + + K+ A H
Sbjct: 118 FEQFGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMH 160
>SB_2941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAE----NGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKE 242
+ND D D+++NG + N GGD D + DDD + G S++ D +
Sbjct: 58 DNDGGDDDDDDDDEVNGGNDDDDFNNGGDCDDDDDDDDDDDDDDDDINKKGASYDDDDDD 117
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 272 IESINVKTDPNTGRSRGFAFIVFKAPES 355
+ + V TD TGR RGF F+ +A ++
Sbjct: 107 VVDVRVITDRETGRPRGFGFVTLEAKKT 134
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTIN--NKKVDPKKAKAR 430
GA+G + ++ + N ++ + KA E + V A + +K + K +
Sbjct: 20 GAHGLLGALEISPHENYQQNGNSS--TNKAREISNNVAALPIDLVGEVSKDISKYKVVSN 77
Query: 431 HGKIFVGGLSSEISDDEIRNFFSEFG 508
K+FVG + ++ E+++FF FG
Sbjct: 78 KCKVFVGNIGFKVRARELKDFFGYFG 103
>SB_1073| Best HMM Match : Ribosomal_L12 (HMM E-Value=2.2)
Length = 244
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 72 ANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDD 194
A N+ +A+ +T +N N N N ++ ++N+ DDD
Sbjct: 160 AINEKYAKIMTDNNNNNNNNNNNNNNNNNNNNNNNNNNDDD 200
>SB_41060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 78 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDD 194
ND+ DI D+ NGN + G D+ D ++ DDD
Sbjct: 20 NDDDGDDIDDDDG-NGNGNDNGDDNDDDDNDDEGNGDDD 57
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 254 FGAYGEIESINVKTDPNTGRSRGFAFIVF 340
F G++ + + +D N+ RS+G A+I F
Sbjct: 166 FSKVGQVSDVRIISDRNSRRSKGIAYIEF 194
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 135 NGGGDSQDHNSAXAPGRDDDRKLFVGGLSWETTDKELRD 251
NGG + D + A R++ +LFV GL E ++ +LR+
Sbjct: 603 NGGKSTDDASDAAYELRNEGVELFVVGLGDENSEAQLRE 641
>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
Length = 691
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAENGGGDSQD 158
+++++A D DN +NG+ ++GGGD D
Sbjct: 585 DDEDYAGD--GDNDVNGDGDSGGGDDDD 610
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 251 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 424
+F YG IE + V D T +RG ++ F S +A E N DPK K
Sbjct: 42 AFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASS--AALACEEMDGRNIGDDPKPIK 97
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 263 YGEIESINVK---TDPNTGRSRGFAFIVFKAPESIDKVM 370
+GEIE PN G RG+ F+ FK E K +
Sbjct: 410 FGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 666 WCCTLHIDLLSTNCSFGSLKQIIYNL 589
WC D+L+T CS GS++ ++ L
Sbjct: 3068 WCLDCRGDILATGCSDGSVEVVVARL 3093
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 440 IFVGGLSSEISDDEIRNFFSEFG 508
++VGGL ++++ ++R+ F +FG
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFG 328
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 201 LFVGGLSWETTDKELRDH 254
L+VGGL + T+++LRDH
Sbjct: 306 LYVGGLEGKVTEQDLRDH 323
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGN--AENGGGDSQDHN 164
NNDN+ + DN N N NG DS D+N
Sbjct: 90 NNDNYDNNGNNDNNDNYNNYDNNGNNDSNDNN 121
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 75 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAXAPGRDDD 194
NN+N +I +N N N N ++ ++N+ DDD
Sbjct: 112 NNNNNNNNINNNNNNNNNNNNNNNNNNNNNNNDDDDDDDD 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,487,831
Number of Sequences: 59808
Number of extensions: 466678
Number of successful extensions: 2579
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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