Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20091
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   0.86 
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    28   1.5  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    27   2.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   8.0  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.0  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 513 PKSFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQAFFDN 352
           P+  R RQ++   EIE++EC      ++E  L+     +  SL+     AFFD+
Sbjct: 706 PEPLRERQSQLLYEIEAEECQNKQKELIEKSLMQ----KGRSLSPKKSNAFFDS 755


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 448 HGSISFRIPATFFFFSSMGVLDFKSS--TSFLRQLDRLGGKNILPCGRTSDSHL*EYL*A 275
           +GS  F      FF++ MG L F  S  TSFL  L  L G  I  CG    + L +Y   
Sbjct: 61  YGSFMFSFLGRGFFYAFMGTLLFSYSGFTSFLGFLVLLAG--IAYCGANYVAGLQDYAPR 118

Query: 274 YLESHDY 254
            +  +D+
Sbjct: 119 SMRDNDW 125


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -3

Query: 623 LEGHQS*YALTSSLVTSVENRNLLWLES-----CVWNVVRDSLNHFVIAR 489
           LEGH       +SL T+ EN ++L   S      +WN+VRD +N+ V  R
Sbjct: 11  LEGHSG---WVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQR 57


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 447 CDHILEIQFPLRR 485
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 399 QWVSLTSNLQQAFFDNLTGSVEKIFYHVEELRIRTCRNIFELIWNLMTTYVRQQTFTPAG 220
           Q+VSL S   Q F DN    VE + Y    +   + R + +   N+    V   T T   
Sbjct: 466 QYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQSYTNVSNGLVFVNTTTDVN 525

Query: 219 MIRNIV 202
            + +I+
Sbjct: 526 KLPSII 531


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 403 SSMGVLDFKSSTSFLRQLDRLG 338
           +S+G+LDF+S   F  +L R G
Sbjct: 169 TSLGILDFRSDNGFYARLARHG 190


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 424 PATFFFFSSMGVLDFKSSTSFLRQLDRL 341
           PA+ + F+ + VLD+      LR L+RL
Sbjct: 105 PASIYTFNELVVLDYPHKDRALRYLERL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,547
Number of Sequences: 5004
Number of extensions: 64745
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)