Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20091
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   6.3  
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670...    28   8.3  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 312 LPHGRIFFP--PSLSSCRRKLVEDLKSRTPIEEKKKKVAG 425
           LP  + F P  P+L+   R+  + +KS  P+EE++ K  G
Sbjct: 645 LPRSKDFMPTFPALNEQDRRFKKHMKSPDPLEEQRMKEQG 684


>06_01_0874 -
           6702059-6702733,6703146-6703521,6703677-6703770,
           6705455-6705833
          Length = 507

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 583 WLRPLRIETSFGWSPVCGMLC 521
           WL  + + TSFG+S +C  LC
Sbjct: 212 WLSVIAVATSFGYSSICLGLC 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,823,183
Number of Sequences: 37544
Number of extensions: 410795
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)