Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20091
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 53 3e-07
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_35088| Best HMM Match : Rota_NS26 (HMM E-Value=9.9) 29 3.7
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 3.7
SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025) 29 4.9
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0) 28 6.4
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 28 8.5
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 399 EEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMI*AI-AHNIPHTGLQPKEVSILNG 575
E+KK ++ GIL +M+PC +L + FP++ D+G+Y+++ A + H +
Sbjct: 80 EDKKHRIKGILDVMKPCQDVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSED 139
Query: 576 RNQR*S*GVSALMTFKCACVDV 641
+ ++ LMTFKCA VDV
Sbjct: 140 VDIDEVQALATLMTFKCAVVDV 161
>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 279 QRYSYKCESEVLPHGRIFFPPSLSSC 356
QR YK SE HGR FP SL C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188
>SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 486 RASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSN-LQQAFFDNLTGSVEKIFYHVEE 310
RA+ + +C +P ++ R LSF+ WV L+ + + + + GS ++ +HV E
Sbjct: 17 RATHFDKDADCYAQIPHKIDPRGLSFTIAAWVKLSKDAVTRKSIISDWGSKKQFSFHVYE 76
Query: 309 LRIRTCR 289
++R R
Sbjct: 77 TKLRIQR 83
>SB_35088| Best HMM Match : Rota_NS26 (HMM E-Value=9.9)
Length = 170
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 333 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 506
F SLSS R K+ DLK S + +++ K A + L++ C ++L F + +E
Sbjct: 50 FSSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 109
Query: 507 I 509
+
Sbjct: 110 V 110
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 503 NDLGYRAQHSTHRTPTKGGFDSQRT*PEMKLRRISFDDLQVRVRGRA 643
N G ++ S RTP +GG +R R S DD+ + GRA
Sbjct: 376 NTRGSQSSDSRKRTPARGGAQQKRKTLSRDHRNNSVDDIFLSATGRA 422
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 333 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 506
F SLSS R K+ DLK S + +++ K A + L++ C ++L F + +E
Sbjct: 282 FSSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 341
Query: 507 I 509
+
Sbjct: 342 V 342
>SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025)
Length = 358
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 497 LRNDLGYRAQHSTHRTPTKGGFDSQ 571
+R LGY A+ S+ TP G DSQ
Sbjct: 162 IRQQLGYSAESSSDSTPPGAGIDSQ 186
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 333 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 506
F SLSS R K+ DLK S + +++ K A + L++ C ++L F + +E
Sbjct: 148 FLSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 207
Query: 507 I 509
+
Sbjct: 208 V 208
>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 490
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -2
Query: 462 QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQAFFDNLTGSVEKIFYHVEELRIRTCRNI 283
++C +M+ + + L + L ++ + + +F +++ SVE I H E R CRN+
Sbjct: 361 EQCIQMMCTMYQKARLVHADLSAYNMLWHEGRVWFIDVSQSVEPIHPHALEFLYRDCRNV 420
Query: 282 FE 277
E
Sbjct: 421 VE 422
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 303 SEVLPHGRIFFPPSLSSCRRKLVEDLKSRTPIEEKKKKVAGILKLMEPC 449
+ +LP + + P L + V D S+ P+EEK K++ K E C
Sbjct: 169 ASLLPAEKEGYGPKLMEVIAERVNDACSKKPLEEKLKELQNKYKTPENC 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,518,325
Number of Sequences: 59808
Number of extensions: 464416
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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