Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20091
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    29   4.3  
Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
 Frame = +3

Query: 363 KLVEDLKSRTPIEEKKKK-VAGILKLMEPCDHILEIQFPLRRDSGDYEMI*A-----IAH 524
           KL E+LKS +  ++ KK  V+GIL  ++P + +L I FP+RRD+G++E+I A       H
Sbjct: 61  KLAEELKSNSLSQKDKKNLVSGILGAIKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEH 120

Query: 525 NIPHTGLQPKEVSILNGRNQR*S*GVSALMTFKCACVDV 641
             P  G     + +     +     +SALMT+KCA VDV
Sbjct: 121 RTPTKGGIRYSLDVCEDEVK----ALSALMTYKCAVVDV 155



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 262 EIPDKLKDIPTSANPKFFHMVEYFFHRACQVVEESL 369
           ++ D+ K +    NP F+ MV+++F++  +V+   L
Sbjct: 27  QVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKL 62


>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 430 RIPATFFFFSSMGVLDFKSSTSFLRQLD 347
           R P T F F   GV++  S  SF+RQLD
Sbjct: 127 RKPGTVFNFCDWGVINHLSCISFIRQLD 154


>Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical
           protein F02C12.1 protein.
          Length = 815

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 247 HIRSHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVEESLLKI*SQGH-PLKRRKRK*P 423
           HI  H++P K K +P+S+ PK     +       ++VEE L  + ++G   L   K+K  
Sbjct: 612 HIHEHDVPKKSKPMPSSSVPKM--QAKQLTVSDKKIVEEHLQALDARGQSKLPASKQKIT 669

Query: 424 VF*NL-WN 444
            + N+ W+
Sbjct: 670 TYLNVGWD 677


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 561 KPPLVGVLCVECCAR*PKSFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQW 394
           +PP      V   AR P S   +  +  EE++S +   ++  V+ YRL  +SSL W
Sbjct: 751 QPPSAAPRNVAASARSPHSVMVQWQQPKEELDSGD---VLGYVVRYRLAGYSSLTW 803


>Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.5 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/85 (18%), Positives = 33/85 (38%)
 Frame = -2

Query: 360 FDNLTGSVEKIFYHVEELRIRTCRNIFELIWNLMTTYVRQQTFTPAGMIRNIVLRASF*T 181
           FD L    +  FYH  +  I     + +L+  L++ Y+       AG +   +       
Sbjct: 132 FDRLVSHYKSKFYHTHQYFIAVSLLVLQLLLTLVSFYIAYYGVHLAGYVPVCIHYPRLAV 191

Query: 180 EFLSGGTTDLAIFLRCSMVAYYVKY 106
            + +  T    + + C +V  ++ Y
Sbjct: 192 HYSTVNTVRTVVMVCCLVVTGFIYY 216


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 128 MLHLKNIAKSVVPPLKNSVQNEALNTMFRIIPAGVNVCCRTYVVMR 265
           ++H      ++VP L     N+  N + + IPAG NV  + + VMR
Sbjct: 352 VIHEVQRHSNMVPFLGTHQSNKDTNVLGQNIPAGTNVLVQAWSVMR 397


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 128 MLHLKNIAKSVVPPLKNSVQNEALNTMFRIIPAGVNVCCRTYVVMR 265
           ++H      ++VP L     N+  N + + IPAG NV  + + VMR
Sbjct: 352 VIHEVQRHSNMVPFLGTHQSNKDTNVLGQNIPAGTNVLVQAWSVMR 397


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/85 (18%), Positives = 34/85 (40%)
 Frame = -2

Query: 360 FDNLTGSVEKIFYHVEELRIRTCRNIFELIWNLMTTYVRQQTFTPAGMIRNIVLRASF*T 181
           FD L    +  +YH+ +  I T   + +L+  + + Y+     + AG +     R     
Sbjct: 131 FDRLISHYKSRYYHMHQYFIATSLLVLQLLLTMFSFYIVFYGVSLAGYVPMCNFRPELTV 190

Query: 180 EFLSGGTTDLAIFLRCSMVAYYVKY 106
            + +       + + C +V  +V Y
Sbjct: 191 YYGAINNVRTGVMVSCIIVTMFVYY 215


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 128 WWLIMLSTKIGLGIGSPYTY 69
           WW I+  T IG G  +P+TY
Sbjct: 368 WWAIVTMTTIGYGDITPHTY 387


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 348 SSCRRKLVEDLKSR--TPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDY 500
           ++ R   V DLKSR    +++  +++A IL++ME   H+      +R  +GD+
Sbjct: 497 NATRYMSVGDLKSRYGDKVDDVAEEIAVILRIMEKLWHVFMPDSYIRTMTGDF 549


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 289 PTSANPKFFHMVE-YFFHRACQVVEESLLKI 378
           P   N  +F + + YF  + CQ+V+ESL KI
Sbjct: 124 PPKINHLYFQLADGYFDEQQCQMVKESLNKI 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,157
Number of Sequences: 27780
Number of extensions: 362010
Number of successful extensions: 1003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)