Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20091
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    29   3.0  
At2g44200.1 68415.m05500 expressed protein                             29   3.0  
At3g23570.1 68416.m02965 dienelactone hydrolase family protein s...    28   5.2  
At5g66420.1 68418.m08377 expressed protein                             27   9.2  
At4g10090.1 68417.m01651 expressed protein                             27   9.2  

>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 115 IISHHAASQEYRQVSGSAAQEFCSK*SPQ--YNVPNHTSW 228
           I  H+    +  QVSG+   EFC   SP+  YN  +  SW
Sbjct: 35  IFEHNHNLNDVTQVSGALEYEFCDSSSPKAVYNPGHDISW 74


>At2g44200.1 68415.m05500 expressed protein
          Length = 493

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
 Frame = +2

Query: 374 RFEVKDTH*REEKESSRYSKTYGTMRSHS*DSISSEARFWRLRNDLG----YRAQHSTHR 541
           R E+ D H R E+  + Y +    M   S    S +  + R R+DL      R  H  H 
Sbjct: 254 RSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHYERRRSDLDDESKRRESHDKHF 313

Query: 542 TPTKGGFDSQ--RT*PEMKLRRISFDD 616
              +   D +  R   + K RR   DD
Sbjct: 314 ERQRSDLDDEYKRRESQDKRRRSDIDD 340


>At3g23570.1 68416.m02965 dienelactone hydrolase family protein
           similar to SP|Q9ZT66 Endo-1,3;1,4-beta-D-glucanase
           precursor (EC 3.2.1.-) {Zea mays}; contains Pfam
           profile: PF01738 dienelactone hydrolase family
          Length = 239

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 217 HTSWSECLLPHIRSHEIPDKLKDIPTSANPKFFHMVEYFFH 339
           H+  +  L+PH+  +E P+  K     A   F+ +V  FFH
Sbjct: 37  HSKLAVLLVPHVFGYETPNLRKLADKVAEAGFYAVVPDFFH 77


>At5g66420.1 68418.m08377 expressed protein
          Length = 655

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +1

Query: 109 LNIISHHAASQEYRQVSGSAAQEFCSK*SPQYNVPNHTSWSECLLPHIRSHEIPDKLKDI 288
           +NI SHH    E+ +   ++  E C K   Q      TS       H   H +  +L+ I
Sbjct: 307 VNIYSHHINDPEFAEALVASFLEICPKTYAQIKPSETTSTKPSTGEHDDGH-VRSRLERI 365

Query: 289 PTSANPKFF 315
           P S  PK F
Sbjct: 366 PYS--PKEF 372


>At4g10090.1 68417.m01651 expressed protein
          Length = 262

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 174 LSGGTTDLAIFLRCSM-VAYYVKYENRVRNRVALHLLNF*NKLIIFVSFMLDCSD 13
           LS  ++D  IFL  +   ++Y +   ++   +A H  N  N+L+ F   M+ CSD
Sbjct: 51  LSSNSSDALIFLAFARPFSHYDRILRKLGCNLATHKSN--NRLVFFDMLMVKCSD 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,036
Number of Sequences: 28952
Number of extensions: 336069
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)