Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20090
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.27
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 28 1.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 1.9
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.4
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 26 4.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 4.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 26 5.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.8
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 5.8
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 26 5.8
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 25 7.6
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 7.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.6
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +2
Query: 86 VNHLPLNCLNR*PAKHLLTKSQVQKKVISLQVPRAVMAESQTMLKKTKHSDLAL 247
V+ PL+ L+ L+K + K ++SLQ +A++A S +++ ++HS L +
Sbjct: 152 VSTCPLSFLSYSTGVERLSKELILKDLLSLQFQQALLAISPSVIVTSEHSPLVM 205
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 4 HEPTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETP-IDEIAGPEESNFPPS 180
H P S T++ + A K + DTK P +P + + P I +I E S
Sbjct: 404 HNPLSEDDTSNGDKAAKRKGSFNDTK----PIVNVPSIVEIDDPTILDIVEEEPLARNDS 459
Query: 181 ASSGYGGEPDYVEEDQAFG 237
SS Y D EE + FG
Sbjct: 460 FSSPYSPAEDMAEESEFFG 478
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 182 ALGGKLLSSGPAISSIGVSLVIGLGSSVEGDSLGLVSGFVNFSR 51
A GG L+ I S+G V G+ V G ++SG S+
Sbjct: 1228 AAGGLALAGVTTIGSVGSKAVTGVADGVTGTGKHIISGAKGISK 1271
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 79 KPSESPSTELPKPITSETPIDEIAGPE-ESNFPPSASSGY 195
+P PS E+P+P + T + E+ PE + P +S Y
Sbjct: 1217 RPILLPSFEIPEPCNTATSVQELINPEINQDDSPIVASRY 1256
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 195 ITARGTWREITFFWTCDFVNRCFAGYRFRQF 103
+T +GT+ + + DFVN+C GY F F
Sbjct: 619 VTNKGTYDFL--YLRIDFVNKCNVGYAFINF 647
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 135 RCFAGYRFRQFSGR*FTGLSVRFCEL 58
+C+ GY+F ++G+ G V CEL
Sbjct: 105 QCYGGYQFGDWAGQLGDGRVVSLCEL 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 16 STTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGY 195
S+TK + + E T+P+ K E + P TS TP + + S P+++S Y
Sbjct: 27 SSTKEESSNTPSTE--TQPEKKAEEPEAAAEPSESTS-TPTNASSVATPSGTAPTSASLY 83
Query: 196 GGEPD 210
GE D
Sbjct: 84 VGELD 88
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Frame = +1
Query: 10 PTSTTKT------ADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGP----E 159
PTST+ T A S P T S + ST +P S TP+ P
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Query: 160 ESNFPPSASSGYGG 201
S PP AS+ G
Sbjct: 367 TSTPPPPASTSSTG 380
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 10 PTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGP----EESNFPP 177
PTST+ T D + L P T S + ST +P S TP+ P S PP
Sbjct: 265 PTSTSST-DTNSSPL-----PTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPP 318
Query: 178 SASSGYGG 201
AS+ G
Sbjct: 319 PASTSSTG 326
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 352 LCCKQIISLRKQKQKSQGSSLGICWADTYTLPPS 251
LC + +RK QK C DTYT P S
Sbjct: 197 LCSGNMTRVRKNLQKENERMFHECKDDTYTWPSS 230
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 64 TKPDTKPSESPSTELPKP-ITSETPIDEIAGPEESNFPPSAS 186
TKP P+ TE P P +TSE+ E A P P ++
Sbjct: 147 TKP-AAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSA 187
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 416 RVSCIDGDYTQCNHHDYNNNNHITSSFPYPPYKGAAQR 529
R+ +D D HHDY N+N P + A +R
Sbjct: 107 RIMGMDIDIVNLRHHDYTNSNSSNKLVFGTPLEDALRR 144
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 64 TKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYV 216
TK KP PS+ P ++E ++ PE+ P + G YV
Sbjct: 320 TKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGSSPYV 370
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 470 NNNHITSSFPYPPYKGAAQR 529
NN H S++ YP ++GA ++
Sbjct: 145 NNPHFQSNYNYPSFRGAVKQ 164
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 70 PDTKPSESP-STELPKPITSETPIDE 144
PD K E STELP I S TP D+
Sbjct: 174 PDRKKFEPRRSTELPSKIPSSTPKDD 199
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 10 PTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 189
P TA S K + +PS S +T++P P + TP +AG + + P S+
Sbjct: 289 PGGKDATASSSSSFSSKREEAAAEPSSSTATDIPPPYS--TP--SVAGASDYSTP---SA 341
Query: 190 GY 195
GY
Sbjct: 342 GY 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,865
Number of Sequences: 5004
Number of extensions: 56742
Number of successful extensions: 233
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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