SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20090
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735     34   0.12 
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    33   0.16 
12_02_0009 + 12247232-12247380,12249821-12249854,12250861-122510...    33   0.28 
02_01_0302 - 2021221-2023305                                           32   0.37 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    32   0.49 
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456...    32   0.49 
10_05_0072 + 8839223-8839720                                           31   0.85 
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    31   0.85 
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354...    31   1.1  
02_04_0602 - 24259703-24259918,24261663-24261821                       30   1.5  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    30   1.5  
07_03_1107 - 24024387-24024497,24025799-24026410                       30   2.0  
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961...    30   2.0  
05_07_0359 - 29539294-29540832,29542366-29542518                       29   2.6  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           29   3.4  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   3.4  
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491...    29   3.4  
01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713           29   3.4  
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36...    29   4.5  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    29   4.5  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    29   4.5  
07_01_0962 - 8075975-8077282                                           28   6.0  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    28   6.0  
04_04_0675 + 27183826-27184443                                         28   6.0  
11_01_0768 - 6442332-6443792                                           28   7.9  
04_04_1654 - 35075409-35075926,35076396-35078694                       28   7.9  
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103     28   7.9  
03_06_0711 - 35682293-35682952                                         28   7.9  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    28   7.9  

>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
          Length = 637

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 7   EPTSTTKTADISEQAL-EKFTKP-DTKPSESPSTELPKPITSETPIDEIAGPEESNFPP 177
           +P S TKTA  S  A  E+  KP D +PS+  ST+      ++T     +GP E +F P
Sbjct: 134 QPLSETKTASSSSDAKPEQQEKPRDHQPSQEVSTKQDDKAENDTKATATSGPLEFSFHP 192


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
 Frame = +1

Query: 34  DISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPP--SASSGYGGEP 207
           D++ +A+E+F     K +ES   +  +      P  +I G E  N+    + S   G +P
Sbjct: 254 DLANRAMEEFFSL-MKENESLLVKKKENGPLWLPHMDILGVESLNYQEYLAKSRTIGQKP 312

Query: 208 -DY---VEEDQAFGPGTCR*AAKYMYQPNKFLEMIPVIFASASVVILFAYNKAVLHPYMD 375
            D+   V  D A   G+C    K +   N++ E+ P I ASA+   + +   + LH  + 
Sbjct: 313 VDFKVVVTRDTAIVNGSCVDLVKSLLDANRWRELFPGIVASANTTKIISTGPSNLHDGLL 372

Query: 376 VTKNL 390
             KNL
Sbjct: 373 QLKNL 377


>12_02_0009 +
           12247232-12247380,12249821-12249854,12250861-12251007,
           12251095-12251304,12251452-12251787
          Length = 291

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 303 RDHL*EFVGLIHILCRLATSARSECLV 223
           RDHL   + L++  C LAT  RS CLV
Sbjct: 27  RDHLYSNISLVYFYCLLATPRRSRCLV 53


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = +1

Query: 4   HEPTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSA 183
           H P  +T T          +T P    ++ P      P  S  PI     P  S  PPS 
Sbjct: 531 HSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST--PPSSGSPPSP 588

Query: 184 SSGY 195
           SSGY
Sbjct: 589 SSGY 592


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +1

Query: 4    HEPTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPIT-SETPIDEIAGPEESNFPPS 180
            + PTS + +      +    +   T PS SP++    P + S +P      P    + P+
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1728

Query: 181  ASSGYGGEPDYVEEDQAFGPGTCR*AAKYMYQPN 282
            + S     P+Y     ++ P + + +  + Y P+
Sbjct: 1729 SPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPS 1762


>02_01_0610 +
           4564016-4564018,4564166-4564243,4564764-4564788,
           4564870-4564902,4565034-4565155,4565230-4565360,
           4565509-4565732,4565824-4566065,4566268-4566357
          Length = 315

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = +1

Query: 10  PTSTTKTADISEQALEKFTKPDTKPSESPSTELPKP--ITSETPIDEIAGPEESNFPPSA 183
           P ST  TA+ + +   KF  P T P      + PK   +++ +P    A    S  P +A
Sbjct: 198 PPSTAPTAEEAAEEEPKFI-PFTGPGRRLDGKAPKDKDVSASSPAKRQANATNSVQPSTA 256

Query: 184 SSGYGGEPDYVEEDQAFGPGTCR*AAKYMYQPNK 285
           S+          E   FGPG  R + +    P K
Sbjct: 257 STSQSSSSRKTTEKLVFGPGGNRTSKETEKVPEK 290


>10_05_0072 + 8839223-8839720
          Length = 165

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 82  PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYG 198
           P  +     PKP   E P +     +E   PPS+S G+G
Sbjct: 87  PPAAGDAAAPKPAAEEPPKEPAPAEKEEGKPPSSSEGFG 125


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +1

Query: 10  PTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 189
           P S      + E+ L +F  P T    +PS   P P+ ++   +    P  ++ PP+ SS
Sbjct: 48  PPSPPPPPPLDEETLAQFPSPPT----NPSPPPPPPLDADAAAEAAPSPALTSPPPNPSS 103

Query: 190 GYGGEPDYVEEDQ 228
                 D  EE++
Sbjct: 104 SPLPPTDTTEEEE 116


>07_03_1391 +
           26234647-26235026,26235112-26235226,26235345-26235410,
           26235519-26235607,26235717-26235807,26235917-26236063,
           26236160-26236252,26236373-26236474,26236581-26237255
          Length = 585

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 7   EPTSTTKTADISEQALEKFTKPDTKPS-ESPSTELPKPITSETPIDEIAGPEESNFPPSA 183
           E T   +T + +E   E+ +    + +  +PST LP+  +SE       GP  SN   + 
Sbjct: 398 EQTVNCQTPEATETPTEEISSQHIQETINNPSTTLPRVASSE-------GPATSNAGDNG 450

Query: 184 SSGYGGEPDYVEED 225
           SS  GGE  + +E+
Sbjct: 451 SSEEGGEDHHRQEE 464


>02_04_0602 - 24259703-24259918,24261663-24261821
          Length = 124

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 67  KPDTKPSESP-STELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQ 228
           +PD  P  SP  T LP P+ ++ P+D+    EE   P         +PD  E ++
Sbjct: 63  RPDIFPKFSPMKTPLPHPLPADDPLDDDEEEEEEE-PQPQEEPQEDDPDKEEPEE 116


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 82  PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYG-GEPDY 213
           P+  PS + P P  +  P   I  P   N PPS   G G G P Y
Sbjct: 160 PALLPSVQAPAPSVARNPNLPIVQPPSVNNPPSRPIGSGNGVPPY 204


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 10  PTSTTKTADISEQALEKFTKPDTKPSESPSTELP--KPITSETPIDEIAGPEESNFPPSA 183
           PT+TT  A  +  A    T     P+E+P+T  P   P T  T     A       PP A
Sbjct: 50  PTTTTPPAASTPPAAAPTTPATPAPAEAPTTPAPTKAPPTKSTKAPAPAPKAAKATPPPA 109

Query: 184 SS 189
           SS
Sbjct: 110 SS 111


>04_03_1036 -
           21895764-21895817,21895928-21895975,21896051-21896154,
           21896624-21896721,21897838-21897916,21898039-21898102,
           21898176-21898294,21898434-21898686,21899273-21899279,
           21899956-21900013,21900300-21900353,21900863-21901055
          Length = 376

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   EPTSTTKTADISEQALEKFTKPDTKPSESPSTEL 108
           E T T + AD++EQ  +KF   D  P E    EL
Sbjct: 170 EATGTLEEADVAEQPKKKFAFVDVSPEELQQKEL 203


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 582 HHQAMFTLHMRRRRSNEMRSKSVHS 656
           HH A+ T+H+RR RS  +   S HS
Sbjct: 85  HHDALLTVHLRRLRSQGLLLMSGHS 109


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 551 HTYKVGEVVRASSGHVYTAHAAETVK 628
           H   +  VV A  GHVYTA A  TVK
Sbjct: 204 HDDAINAVVAAPDGHVYTASADGTVK 229


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 76   TKPSESPSTELPKPIT-SETPIDEIAGPEESNFPPSASSGYG-GEPDYVEEDQAFGPGTC 249
            T PS SP++    P + S +P      P    + P+ S GY    P Y     ++ P + 
Sbjct: 1755 TSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPT-SPGYSPTSPSYSPSSPSYNPSSV 1813

Query: 250  R*AAKYMYQPN 282
            +    + Y P+
Sbjct: 1814 KYTPSHAYSPS 1824


>01_06_0747 -
           31645136-31646521,31647870-31648142,31649080-31649148,
           31649486-31649614
          Length = 618

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 142 EIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGT 246
           ++  P + +F P +  GY G P Y  +  + G  T
Sbjct: 492 QLPPPSQGSFGPPSKGGYAGPPQYAPQGSSHGYNT 526


>01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713
          Length = 246

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -3

Query: 207 WLSAITARGTWREITFFWTCDFVNRCFAGYRFR 109
           W        TW +   +W C FV    A + FR
Sbjct: 199 WAYVNNRHNTWEQFYVYWICPFVGAVLAAWVFR 231


>10_01_0028 -
           359988-359996,360228-360332,360415-360536,360676-360763,
           360988-361056,361132-361461,361544-361610,361695-361753,
           361838-362056,362224-362289,362370-362500,362683-362782,
           362864-363001,363111-363218,363627-363723,363806-364257
          Length = 719

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = +1

Query: 13  TSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASSG 192
           TST K A  +  + +   +P TK +  P  E  KP   +   DE+   +E   PP     
Sbjct: 15  TSTRKRAASASASAKATDEPSTKRTRRPKAE-TKPRKKK---DEV---KEEEKPPMEDDA 67

Query: 193 YGGEPDYVEEDQAFG 237
            G EPD   E+ A G
Sbjct: 68  CGEEPD--AEEMALG 80


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 288 EFVGLIHILCRLATSARSECLVFFNIVWLS-AITARGTWREITFFWTCDFVNRCFAG 121
           +F  LI++L R       +C+VF   + ++ AI+      +   FW C+F+  C +G
Sbjct: 328 KFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSG 384


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 70  PDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 189
           P T PS S S  L  P +   P+D  A    S+ PPS SS
Sbjct: 83  PGTPPSGS-SPVLTLPPSPAKPVDASAAAARSSLPPSPSS 121


>07_01_0962 - 8075975-8077282
          Length = 435

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  STTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPS-ASSG 192
           +TT    +   AL K TKP   P   P   LP P TS     +I     +    S  SSG
Sbjct: 35  ATTARGALPLPALRKPTKPPPPPPLHPRPSLPVPTTSSDDDGDIRRKPATGATASLCSSG 94

Query: 193 YG 198
            G
Sbjct: 95  AG 96


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 13  TSTTKTA--DISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEI 147
           TST K +  DI   A  + T+P  KPSE+ + E  KP  ++   DE+
Sbjct: 661 TSTEKLSESDILAVASSQITEPSKKPSEN-TAENEKPSQTDIATDEL 706


>04_04_0675 + 27183826-27184443
          Length = 205

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = +1

Query: 70  PDTKPSESPSTELPKPITSETPIDEIAGPEESNFP---PSASSGYGGEPDYVEEDQAFGP 240
           P   PS+SPS   P       P      P++   P     A +   GE D V+  +A G 
Sbjct: 99  PSASPSQSPSPPPPASPPPLPPAPSSPPPKKRRLPDGDADADAEDDGESDVVKALRAIGE 158

Query: 241 GTCR*AAKYMYQPNKFLEM 297
           G  R   + M    K  +M
Sbjct: 159 GFLRAEQRRMEAARKTQQM 177


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +1

Query: 7   EPTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSAS 186
           EPT+ T T+ ++    +K T P  +P+   +T      T++    E +   ES    + S
Sbjct: 361 EPTADTATSAVAGSTADKETSPAAEPTADTATSAAAGSTAD---KETSPAAESTVDTATS 417

Query: 187 SGYGGEPD 210
           +  G   D
Sbjct: 418 AAAGSTAD 425


>04_04_1654 - 35075409-35075926,35076396-35078694
          Length = 938

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 172 PPSASSGYGGEPDYVEEDQAFGPGTCR*AAKYMYQPNKFLEMIPVIFASASVVILFAYNK 351
           PP+  S  G +   ++ +   GP     A KY Y  N F    P +  S  V+ L  +  
Sbjct: 277 PPALESMAGLKSVQLDNNNLLGPVPAIKAPKYTYSQNGFCADKPGVACSPQVMALLHFLA 336

Query: 352 AVLHP 366
            V +P
Sbjct: 337 EVDYP 341


>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 85  SESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVE 219
           ++  + ELP+  +     D+ A P+ S    +  +GYGG   +V+
Sbjct: 6   ADDGADELPRTASHPFDADDDAAPDASGGAAADDTGYGGYASFVD 50


>03_06_0711 - 35682293-35682952
          Length = 219

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +1

Query: 10  PTSTTKTADISEQALEKFTKPDTKPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 189
           P+     A  S  AL     P+T P  +PS   P P ++      +     S   PSA+ 
Sbjct: 57  PSQPPSEASSSAAALSPPAPPETSPLPAPSHSPPVPHSAAPEPSPMEHSAASAPAPSAAK 116

Query: 190 GYGGEPDYVEED 225
              G  D  ++D
Sbjct: 117 AKQGGDDEEDDD 128


>03_05_0890 -
           28547462-28547545,28548451-28548528,28548641-28548814,
           28548902-28548958,28549065-28549116,28549907-28549995,
           28550259-28550344,28550427-28550637,28551790-28551882,
           28551958-28552098,28552175-28552267,28553879-28554113,
           28554263-28554435,28555234-28556571,28556668-28556853,
           28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 79  KPSESPSTELPKPITSETPIDEIAGPEESNFPPSASS 189
           KP  SP   +PKP    TPI E +  ++++ PP+ SS
Sbjct: 557 KPFPSP---VPKPPKDPTPIKEESPNKKTDTPPAVSS 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,199,018
Number of Sequences: 37544
Number of extensions: 417632
Number of successful extensions: 1460
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -