Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20089
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 84 2e-17
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 44 2e-05
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 43 4e-05
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 42 1e-04
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 39 6e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 39 8e-04
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 38 0.001
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 38 0.002
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 29 0.84
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 1.9
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 2.6
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 4.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.8
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 84.2 bits (199), Expect = 2e-17
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +2
Query: 86 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKD
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKD 57
Score = 81.4 bits (192), Expect = 1e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +1
Query: 259 VLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITE 438
VLL EMQIQ+PTAS IA+ LL+GELLKQA+++I EGLHP +I++
Sbjct: 60 VLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISD 119
Query: 439 GFDIARNKSLEVLESMKISIEI 504
GF++A+N++L L+S K E+
Sbjct: 120 GFNLAKNEALTFLDSFKTDFEV 141
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/66 (51%), Positives = 50/66 (75%)
Frame = +3
Query: 489 DFN*DCTENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKH 668
DF D E L++VA+TSL TK+ + + L A VDA+LTIR P +P+DLHMVEIM+M++
Sbjct: 138 DFEVD-REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQN 196
Query: 669 KTATET 686
++A++T
Sbjct: 197 RSASDT 202
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
++ E+++ HP A L+ V+ GELL +A+ I GL P I +G
Sbjct: 71 IIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKG 130
Query: 442 FDIARNKSLEVLESM 486
+++A + ++EVLE +
Sbjct: 131 YEMALSHTMEVLEEI 145
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
NI AA+ + D ++T+LGPKG KM+ +G G++ +T D
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTND 60
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMK 665
E+L+ A TSL +K+ +++L VDAVL + P ++ + +I +K
Sbjct: 148 ESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVK 199
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
NI AAK + DV++T LGP+ +KML+ G + +T D
Sbjct: 24 NIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/83 (18%), Positives = 36/83 (43%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
+ +L E+++ HP A + ++L GE+L A + +HP ++
Sbjct: 62 HAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMI 121
Query: 436 EGFDIARNKSLEVLESMKISIEI 504
F A +L +++ + + + +
Sbjct: 122 RSFKQALEDALSIIDEITLPVNV 144
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
N+ A I +V+K++LGP G KMLV GD+ +T D
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTND 62
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/72 (18%), Positives = 33/72 (45%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L + ++HP ++ V++ ELL++A+ + +HP I G
Sbjct: 66 ILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITG 125
Query: 442 FDIARNKSLEVL 477
+ +A ++++ +
Sbjct: 126 YRLAIREAVKFM 137
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +2
Query: 131 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
A+ +I A K + ++++T+LGP+G K+L+S G+I +T D
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTND 75
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 489 DFN*DCTENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEI 653
DF+ + T NL A+TSL +KV D + VDAVL++ K VD ++++
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKV 213
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 134 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
L NI+A +QD ++T LGP G K++V G++ I+ D
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISND 65
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 376 ELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI 492
ELL+QA+I ++ +HP++I +G+ IA +++ L + I
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSI 142
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 397 IFISEGLHPRIITEGFDIARNKSLEVLESMKISIEIALRI 516
+F+ E + I EGF IAR K +E LE +K+ + + I
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKVQPSLRICI 476
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 516 LVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHK 671
L D++ T K VHPS++ L A + L +++ G + ++VE +HK
Sbjct: 14 LSDISTTINKPNVHPSMS--LLKALPECRLVVKSKGDKNNANVVEFPLDRHK 63
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 600 PHQRKHQLAHLQGLGGP*F*VKY 532
PHQR H A L GGP F + Y
Sbjct: 63 PHQRAHNAAALARSGGPGFSMNY 85
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 78 ISFNTFSVSINHEEPLSYKPI 16
ISFN+FS S+N EE + P+
Sbjct: 203 ISFNSFSNSLNSEEDVCVSPM 223
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -3
Query: 247 GDLYVPSTRNQHFHRAFRTKVSFHYILNSFSC 152
G + S RN+ FHR F+ ++++ + C
Sbjct: 187 GYAFANSKRNRDFHRIFKVLPPEDHLIDDYGC 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,975
Number of Sequences: 5004
Number of extensions: 47468
Number of successful extensions: 121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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