Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20089
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 84 9e-17
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 48 5e-06
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 46 2e-05
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 46 4e-05
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 44 1e-04
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 44 2e-04
10_08_0620 - 19321612-19323237 42 6e-04
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 40 0.002
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 34 0.12
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 33 0.21
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 31 0.86
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 30 2.0
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 29 4.6
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 29 4.6
04_01_0078 - 879016-881288,884676-885141 28 8.0
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 84.2 bits (199), Expect = 9e-17
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +2
Query: 83 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
++ +LNP AE + AL +NI+AAKG+QDV+KTNLGPKGT+KMLV GAGDIK+TKD
Sbjct: 2 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKD 58
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/81 (46%), Positives = 49/81 (60%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N LL EMQIQ+PTA +IAR VL IGEL+KQ++ I EG HPR +
Sbjct: 60 NTLLKEMQIQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGTHPRFLV 119
Query: 436 EGFDIARNKSLEVLESMKISI 498
+GFD+A+ +LE LE K S+
Sbjct: 120 DGFDVAKRATLEFLEKFKTSV 140
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +3
Query: 531 RTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 686
+ SL +++ LAD LTD V+AVL IR P +P+DL MVEIM M+HK +T
Sbjct: 172 KLSLLGQLYEGLADQLTDIVVNAVLCIRKPDEPIDLFMVEIMHMRHKFDVDT 223
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+++E+++QHP A ++ + GELL++A+ I GLHP I G
Sbjct: 67 IVNELEVQHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIG 126
Query: 442 FDIARNKSLEVLESM 486
+ A NK++E+LE +
Sbjct: 127 YTKAINKTVEILEDL 141
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N +L E+ + HP A + ++L GE+L A FI + HP +I
Sbjct: 64 NCILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVIC 123
Query: 436 EGFDIARNKSLEVLESMKISIEIALRI*LMLPVLHSKL 549
+ A + +L VL+ + I +++ R+ ML ++ S +
Sbjct: 124 RAYTKALDDALSVLDKIAIPVDVDDRV-AMLGLVKSSI 160
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAMFCYMR 274
NI AAK + D+++T LGP+ +KML+ AG I +T D C +R
Sbjct: 26 NIQAAKAVADIIRTTLGPQSMLKMLLDAAGGIVVTNDGN-CILR 68
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +2
Query: 119 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
R A NI+A K + +++T+LGPKG KML S GD+ IT D
Sbjct: 25 RGLDAQKANIAAGKAVARILRTSLGPKGMDKMLQSPDGDVTITND 69
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L +M + + A L+ V++ G LL+QA+ + G+HP I EG
Sbjct: 73 ILEQMDVDNQIAKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEG 132
Query: 442 FDIARNKSLEVLESMKISIEIA 507
+++A + + LE + E +
Sbjct: 133 YELASRIAFDHLEHISHKFEFS 154
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
NI AAK + D+++T LGP+ +KML+ +G I +T D
Sbjct: 26 NIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTND 62
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N +L E+ I HP A + ++L GE+L A+ FI + HP +I
Sbjct: 64 NAILREIDIAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVIC 123
Query: 436 EGFDIARNKSLEVLESMKISIEI 504
+ A +L VL+ + + +++
Sbjct: 124 RAYTKALEDALAVLDKIAMHVDV 146
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +2
Query: 140 VNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAMFCYMRCKSSTLQP 298
+NI+AA+ + D ++T+LGP+G KM+ SG ++ IT D R S LQP
Sbjct: 30 LNIAAARAVADAVRTSLGPRGMDKMISSGEQEVIITNDGATILSR--MSLLQP 80
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L M + P A ++A V+L G LL++A +S G HP +
Sbjct: 71 ILSRMSLLQPAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADA 130
Query: 442 FDIARNKSLEVLESMKISIEIALR 513
+++EVL +M I IE++ R
Sbjct: 131 LHRLATRAVEVLHAMAIPIELSDR 154
>10_08_0620 - 19321612-19323237
Length = 541
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/84 (26%), Positives = 38/84 (45%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L M + P A ++A V+L G LL++A +S G HP +
Sbjct: 75 ILSRMPLLQPAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADA 134
Query: 442 FDIARNKSLEVLESMKISIEIALR 513
+ +++EVL M I +E++ R
Sbjct: 135 LHLLAARAVEVLHGMAIPVELSDR 158
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +2
Query: 140 VNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GD--IKITKD 253
+NI+A + + +T+LGP+G KM+ S + GD + IT D
Sbjct: 30 LNIAAGRAVAAAARTSLGPRGMDKMISSSSSGGDQAVIITND 71
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
++ + I HP A ++ VLL E LK+A +I +G+HP +
Sbjct: 68 IMRLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRS 127
Query: 442 FDIARNKSLEVLESMKISIE 501
+ A + ++E ++ + SIE
Sbjct: 128 YRTAGHLAIEKVKDLATSIE 147
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L + I +P A ++ V+L GELL++A+ ++ +HP I G
Sbjct: 63 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAG 122
Query: 442 F----DIARNKSLEVLESMKISIE 501
+ + ARN LE K +I+
Sbjct: 123 YRMAVECARNALLERTMDNKENID 146
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L ++++HP A ++ V++ ELLK+ + + +HP I G
Sbjct: 18 ILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISG 77
Query: 442 FDIARN 459
+ + N
Sbjct: 78 YRLQYN 83
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 128 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAM 259
+A A+ + + + D +K +GPKG ++ G K+TKD +
Sbjct: 80 EARALMLRGVEELADAVKVTMGPKGRTVVIEQSFGAPKVTKDGV 123
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 500 SIEIFIDSKTSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSPMR 366
++E + TS + + +KP V + G K L+N +C S P++
Sbjct: 186 TLEEILGHSTSGKVYPSSAKPRVQLNGSKSGLLNKVSCDSQQPLQ 230
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRII 432
+L + I +P A ++ V+L GELL++A+ ++ +HP I
Sbjct: 64 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTI 120
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 62 NVLNEMAAISLLNPKAEFAR--AAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSG 226
N L +AA+ LNP AR AA A A + A D +T L P+ + K+ +G
Sbjct: 321 NPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAG 377
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 328 LEWLTLEQSVRL*GAGFASHVTKHCILG 245
L+WL LE SV L G H+T LG
Sbjct: 816 LKWLALEHSVELRGEWILEHLTSLAYLG 843
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,931,205
Number of Sequences: 37544
Number of extensions: 313380
Number of successful extensions: 672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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