Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20089
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               94   1e-19
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              48   9e-06
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  42   4e-04
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   40   0.002
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                32   0.38 
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)                   31   0.67 
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      31   1.2  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   6.2  
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/76 (56%), Positives = 57/76 (75%)
 Frame = +1

Query: 277 QIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIAR 456
           QIQHPTASLIAR                V++IGELLKQAD+++SEGLHPR++TEGF++A+
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAK 229

Query: 457 NKSLEVLESMKISIEI 504
            K+LEVLE +K+S E+
Sbjct: 230 KKALEVLEEVKVSREM 245



 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 37/59 (62%), Positives = 50/59 (84%)
 Frame = +3

Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 686
           + L++VA+TSL+TKV   LAD+LT+  VDAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 248 DTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +2

Query: 77  MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 232
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +2

Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
           NI+AAK + D ++T+LGPKG  KM+  G GD+ IT D
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITND 65


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +2

Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
           +I AA+ +  ++KT+LGPKG  KM+VS  G++ +T D
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTND 71


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 86  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKD 253
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  K+L S    G+I++T D
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTND 63



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +3

Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIME 659
           E+L+++ART+L +K+     D      VDAVL ++  G   DL+ ++I++
Sbjct: 154 EDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG---DLNAIQIIK 200



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/77 (22%), Positives = 34/77 (44%)
 Frame = +1

Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
           +L  + I +P A ++                   +L  ELLK+A+  +S  +HP+ I  G
Sbjct: 67  ILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAG 126

Query: 442 FDIARNKSLEVLESMKI 492
           +  +   + + LE+  +
Sbjct: 127 WRKSVKAAEKALEAAAV 143


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 98  NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAM 259
           N   E    A+A A  +     + D +   LGPKG   ++    G  KITKD +
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGV 110


>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
          Length = 483

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 216 WFLVLGT*RSPRMQCFVT*DANPAPYSLTDCSSVNHSR*CHWRW---YNIYC 362
           W+   G  R  +++C     A  A +++T+ S++NH   CH  W   + +YC
Sbjct: 373 WWKRQGPARYDQLKCLTLTQATGASFTMTNHSALNHCFDCHPLWCACWPVYC 424


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +3

Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIME 659
           ++L+++ART+L +K+     D      VDAVL ++  G   DL+ ++I++
Sbjct: 72  DDLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 500  SIEIFIDSKTSNDLLRAMSKPS 435
            SIE+F+DS + ND+  A+ +P+
Sbjct: 1709 SIELFVDSTSENDVFTAVDEPN 1730


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 262 KHCILGDLYVPSTRNQHFHRAF 197
           K+  LGD+Y+P  RN H  R F
Sbjct: 38  KYGDLGDIYIPRDRNTHESRGF 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,645
Number of Sequences: 59808
Number of extensions: 365881
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)