Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20089
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 79 2e-15
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 79 2e-15
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 48 4e-06
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 46 2e-05
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 46 2e-05
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 43 2e-04
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 42 4e-04
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 37 0.014
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 36 0.019
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 33 0.14
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 31 0.54
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 31 0.95
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 31 0.95
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.7
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 29 2.9
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct... 29 2.9
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.8
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 29 3.8
At1g23070.1 68414.m02884 hypothetical protein contains Pfam prof... 29 3.8
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 29 3.8
At5g49110.1 68418.m06079 expressed protein ; expression support... 28 6.7
At5g34780.1 68418.m04048 dehydrogenase E1 component family prote... 27 8.9
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = +2
Query: 83 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKD
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKD 58
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N LL EMQIQ+PTA +IAR V+ IGEL+KQ++ I EG+HPR++
Sbjct: 60 NTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLV 119
Query: 436 EGFDIARNKSLEVLESMKISI 498
+GF+IA+ +L+ L++ K +
Sbjct: 120 DGFEIAKRATLQFLDNFKTPV 140
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +3
Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 686
E L VART+L+TK++ LAD LTD V++VL IR P + +DL MVEIM M+HK +T
Sbjct: 149 EILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDT 207
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = +2
Query: 83 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKD
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKD 58
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N LL EMQIQ+PTA +IAR V+ IGEL+KQ++ I EG+HPR++
Sbjct: 60 NTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLV 119
Query: 436 EGFDIARNKSLEVLESMKISI 498
+GF+IA+ +L+ L++ K +
Sbjct: 120 DGFEIAKRATLQFLDTFKTPV 140
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/59 (55%), Positives = 43/59 (72%)
Frame = +3
Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 686
E L VART+L+TK++ LAD LTD V++VL IR P +P+DL MVEIM M+HK +T
Sbjct: 149 EILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDT 207
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+++E++IQHP A L+ + GELL+ A+ I GLHP I G
Sbjct: 72 IVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISG 131
Query: 442 FDIARNKSLEVLESM 486
+ A +K++E+LE +
Sbjct: 132 YTKAVSKAVEILEQL 146
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/84 (22%), Positives = 43/84 (51%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L++M++ P A ++ V++ G LLK+ ++ G+HP +I++
Sbjct: 73 ILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDS 132
Query: 442 FDIARNKSLEVLESMKISIEIALR 513
A K++++L +M + +E+ R
Sbjct: 133 LHKACGKAIDILTAMAVPVELTDR 156
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAMFCYMRCKSSTLQP 298
NI++A+ + D ++T+LGPKG KM+ + G++ IT D + K LQP
Sbjct: 33 NINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDG--ATILNKMEVLQP 82
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 510 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKP--VDLHMVEIMEMKHKTATE 683
++LV A TSL +KV + +L VDAVL++ P KP VDL ++I++ T +
Sbjct: 157 DSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDD 216
Query: 684 T 686
T
Sbjct: 217 T 217
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +1
Query: 256 NVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIIT 435
N +L E+ + HP A + ++L GE+L A+ F+ + HP +I
Sbjct: 62 NAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVIC 121
Query: 436 EGFDIARNKSLEVLESMKISIEI 504
+ A S+ VL+ + +SI+I
Sbjct: 122 RAYIKALEDSIAVLDKIAMSIDI 144
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
NI A+K + D+++T LGP+ +KML+ G I +T D
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 119 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
R A NI+A K + +++++LGPKG KML GDI IT D
Sbjct: 25 RGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITND 69
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L +M + + A L+ V++ G LL+QA+ + G+HP I EG
Sbjct: 73 ILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEG 132
Query: 442 FDIARNKSLEVLESMKISIE 501
+++A ++E LE + E
Sbjct: 133 YEMASRVAVEHLERIAQKFE 152
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 143 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKD 253
N+ A + + +++KT+LGP G KMLV GD+ IT D
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L ++++HP A ++ V++ ELLK+A+ + +HP I G
Sbjct: 64 ILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISG 123
Query: 442 FDIARNKSLEVLESMKIS 495
+ +A +S + +E ++
Sbjct: 124 YRLAMRESCKYIEEKLVT 141
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 274 MQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIA 453
+ I HP A ++ VLL E LK+A FI +G+H + + + A
Sbjct: 72 LDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTA 131
Query: 454 RNKSLEVLESMKISIE 501
++ ++ + +SIE
Sbjct: 132 STLAIAKVKELAVSIE 147
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 361 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKISIE 501
V++ G LL+QA+ + G+HP I EG+++A ++E LE + E
Sbjct: 30 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFE 76
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 262 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 441
+L + I +P A ++ V+L GELL++A+ ++ +HP I G
Sbjct: 65 ILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAG 124
Query: 442 FDIA 453
+ +A
Sbjct: 125 YRMA 128
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 110 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAM 259
E +A A+ + + + D +K +GPKG ++ G K+TKD +
Sbjct: 35 EIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGV 84
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 131 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAM 259
A A + + + +K +GPKG ++ S G KITKD +
Sbjct: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGV 84
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 128 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAM 259
+A A+ + + + D +K +GPKG ++ G K+TKD +
Sbjct: 42 EARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGV 85
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 119 RAAQALAVNISAAKGIQDVMKTNLGPKGTMK 211
+ A NISA K + +++++LGPKG K
Sbjct: 25 KGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 639 ADQQVCLEFEW*VPHQRKHQLAHLQGLG 556
+ + +CL ++ PH +KH+ HL +G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
reductase, chloroplast / 3-ketoacyl-acyl carrier protein
reductase identical to 3-oxoacyl-[acyl-carrier protein]
reductase SP:P33207 from [Arabidopsis thaliana]
Length = 319
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 110 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDAMFCYMR 274
E+ A ++S A + +MKT L GT+ ++V+ AG IT+D + M+
Sbjct: 123 EYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAG---ITRDTLLIRMK 174
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 175 YILNSFSCGYIYSKCLCSTSELGF 104
+I+ S+ G +Y C C +S+LG+
Sbjct: 630 FIMKSYDGGEVYCSCYCVSSQLGY 653
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 211 NVGFWCWGHKDHQ-GCNVLLHEMQIQH 288
++ +W W H H CN L H+ +QH
Sbjct: 189 SIAWWKWTHNAHHIACNSLDHDPDLQH 215
>At1g23070.1 68414.m02884 hypothetical protein contains Pfam profile
PF03619: Domain of unknown function
Length = 414
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 501 DCTENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHK 671
+ TE V+ + TS+K V + D D VLTI PV+ + +I + H+
Sbjct: 331 ETTETQVEASGTSIKESVQDIVIDGGQHVVKDVVLTINQAIGPVEKGVTKIQDTIHQ 387
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 473 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSP 372
TS+ L+ + K + IL C P L N A SS+P
Sbjct: 628 TSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAP 661
>At5g49110.1 68418.m06079 expressed protein ; expression supported by
MPSS
Length = 1487
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 59 ENVLNEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDI 238
E+ + +++ L+N K ++AAQ L + + K + ++K + PKG ++L S +
Sbjct: 1208 ESTVRILSSFVLMNLKE--SQAAQFLRLAVRFYKQLAQIVKLRIAPKGCKQILPS----L 1261
Query: 239 KITKDAMFCYMRCKSSTLQPH*LL-ERQPLKMM 334
K K + CKS T+ + L E Q +K++
Sbjct: 1262 KFQK---LVELTCKSLTVPLYPFLSEMQKVKVV 1291
>At5g34780.1 68418.m04048 dehydrogenase E1 component family protein
similar to SP|P50136 2-oxoisovalerate dehydrogenase
alpha subunit, mitochondrial precursor (EC 1.2.4.4)
(Branched-chain alpha-keto acid dehydrogenase component
alpha chain) {Mus musculus}; contains Pfam profile
PF00676: Dehydrogenase E1 component
Length = 365
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 415 LHPRIITEGFDIARNKSLEVLESMKISIEIALRI*LMLPVLHSKLR 552
L+ + TE ARN +L V+++M I + + L+ LP+ +R
Sbjct: 286 LNDQADTESLKAARNSALNVIQAMIIHLVLTLKGRFSLPLTEETVR 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,721,744
Number of Sequences: 28952
Number of extensions: 253438
Number of successful extensions: 660
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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