Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20088
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 130 1e-30
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 120 9e-28
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 106 2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 45 7e-05
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 39 0.005
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 37 0.014
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.031
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 32 0.52
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 4.8
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 130 bits (314), Expect = 1e-30
Identities = 56/122 (45%), Positives = 84/122 (68%)
Frame = +2
Query: 140 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELSVGITIDIALWKFETSKYYVT 319
Y G +DKRT+EK+E+EA+E + ++ +W LD + E G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 499
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 500 IV 505
++
Sbjct: 286 VI 287
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 508 INKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 609
+NKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 289 VNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 120 bits (290), Expect = 9e-28
Identities = 55/60 (91%), Positives = 56/60 (93%)
Frame = +2
Query: 200 MGKGSFKYAWVLDKLKAELSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 379
MGKGSFKYAWVLDKLKAE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 106 bits (254), Expect = 2e-23
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Frame = +2
Query: 272 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 451
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 452 TREHALLAFTLGVKQLIVG*TK--WIPLNHHTVSP 550
TREHA+L +LGV QLIV K + L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 202
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/110 (24%), Positives = 49/110 (44%)
Frame = +2
Query: 89 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELSVGI 268
+I H D+GK+T T L+ G I +EA + K D ++ E GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 269 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 38.7 bits (86), Expect = 0.005
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 229
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 230 VLDKLKAELSVGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 406
L EL I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 407 AGTG 418
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 37.1 bits (82), Expect = 0.014
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Frame = +2
Query: 71 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 238
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 239 KLKAELSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 412
E+ A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 413 TG 418
G
Sbjct: 231 AG 232
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 37.1 bits (82), Expect = 0.014
Identities = 36/135 (26%), Positives = 57/135 (42%)
Frame = +2
Query: 53 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 232
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76
Query: 233 LDKLKAELSVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 412
LD + V + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 413 TGEFEAGISKNGQTR 457
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.7 bits (71), Expect(2) = 0.031
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 257 SVGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 409
S GIT I + + + +D PGH F G D +++VAA
Sbjct: 121 SGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
Score = 22.2 bits (45), Expect(2) = 0.031
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 83 IVVIGHVDSGKSTTTGHL 136
+ V+GHVD GK++ ++
Sbjct: 94 VTVMGHVDHGKTSLLDYI 111
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 314 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 418
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 31.9 bits (69), Expect = 0.52
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Frame = +2
Query: 5 TSYLGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKST-----TTGHLIYKCGGIDKR 166
T+ LG ++++R +M + + + V+G+VD+GKST T G L G +R
Sbjct: 207 TAELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQR 264
Query: 167 TI-EKFEKEA---QEMGKGSFKYAWVLDKLKAELSVGITIDIALWKFETSKYYVTIIDAP 334
K E E+ +G + + G +D A E+SK +T ID
Sbjct: 265 LFRHKHEMESGRTSSVGNDILGFDNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLA 323
Query: 335 GHRDFIKNMITG 370
GH ++K I G
Sbjct: 324 GHERYLKTTIFG 335
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 320 IIDAPGHRDFIKNMITGTSQADCAVLIV 403
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 178
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 323 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 502
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 503 V 505
+
Sbjct: 123 I 123
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 523 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 663
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 696 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 586
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,200,612
Number of Sequences: 59808
Number of extensions: 472374
Number of successful extensions: 1296
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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