Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20087
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   3.5  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   3.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.2  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   8.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   8.2  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 FSVNYFSIFFLFFDN 394
           F++ YF ++ LFF N
Sbjct: 148 FAIEYFQMYVLFFVN 162


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 FSVNYFSIFFLFFDN 394
           F++ YF ++ LFF N
Sbjct: 148 FAIEYFQMYVLFFVN 162


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 285 SRISRAQLKLYRYLRYCTV 341
           +R+ RA  +L+R+ ++C +
Sbjct: 7   TRVKRASNQLFRFGQFCAI 25


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 338 CTVPFSVNYFSIFFLFFDNGI*IKN 412
           C VP  +   S+ +L  D  + +KN
Sbjct: 336 CCVPTQLGQMSMLYLGSDGSVILKN 360


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 YSWLYSVYTMSKNLLLISRIS 296
           + W + ++T+  +LLL+  +S
Sbjct: 278 FGWSFLLFTLYSSLLLLDYVS 298


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 YSWLYSVYTMSKNLLLISRIS 296
           + W + ++T+  +LLL+  +S
Sbjct: 204 FGWSFLLFTLYSSLLLLDYVS 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,341
Number of Sequences: 336
Number of extensions: 2292
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)