Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20087
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.13 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   3.7  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   4.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.5  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +2

Query: 296 ARSVEAVQIPPVL-YCTVPFSVNYFSIFFLFFDNGI*IKNI-NLICITIKKLEIPVC 460
           ++S+EA+Q   VL +C +P+S+N FS   L+   G+ +  +  LI +    + + +C
Sbjct: 536 SKSMEAIQNALVLVHCRMPYSINGFSSTKLYSGTGVIVSVVPPLIVVDRSVIPVDIC 592


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 512 FTFASILMDNFMSFFETTEDAFFIDYH*FRY 604
           F F ++  DNF++ F    D  +I Y  + Y
Sbjct: 406 FAFVAVFADNFVAIFIALSDFIWICYRGYTY 436


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 505 VNFYLCQYFNGQFYEFL*NNRGCIF 579
           +N + CQ  NGQ  E     R CIF
Sbjct: 39  INAFWCQTLNGQLVEEDEGERNCIF 63


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 181 CECGATLRRNMSNLLHCH 128
           CECG T  R  SN L C+
Sbjct: 566 CECGFTNFRRRSNCLRCN 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,027
Number of Sequences: 5004
Number of extensions: 37910
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)