Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20087
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.0  
SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)                  29   3.9  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   9.1  

>SB_52960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 124 CPRSWCRCSKTSWTSLTNSKTTTYHHPKFLYNLLFSVV 11
           CP   CR    +WTS T  KT  +  P+ +Y+L  +++
Sbjct: 63  CPDHKCRMRFHAWTSKT--KTRNFEEPRLVYDLFGNII 98


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 350  MVQYSTVPEVSVQLQLSARYPTY*E 276
            ++ YST PE+    +++ +YPTY E
Sbjct: 5000 LISYSTNPEIVFNFKMNGQYPTYSE 5024


>SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 499 TDVNFYLCQYFNGQFYEF 552
           +D NF+ C+YF G F+EF
Sbjct: 441 SDFNFWSCRYFLGVFFEF 458


>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -3

Query: 187 F*CECGATLRRNMSNLLHC-HCCPRSWCRCS 98
           F CEC A       + + C  CCP   C CS
Sbjct: 136 FKCECRAPYTGTQCDTIKCPECCPPETCDCS 166


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 136 HCHCCPRSWCRCSKTSWTSLTNSKTTT 56
           H +CC    C C+ T+ T+ T +  TT
Sbjct: 511 HYYCCYYCCCSCTATTATATTTATATT 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,456,264
Number of Sequences: 59808
Number of extensions: 277412
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)