Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20087
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 133 CHCCPRSWCRCSKT 92
           CHCC    C C  T
Sbjct: 747 CHCCDFDACDCEMT 760


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 SWLYSVYTMSKNLLLISRI 293
           SWL    T SK + +ISRI
Sbjct: 403 SWLSKFPTRSKRIDVISRI 421


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 SWLYSVYTMSKNLLLISRI 293
           SWL    T SK + +ISRI
Sbjct: 403 SWLSKFPTRSKRIDVISRI 421


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 480 LIRHYHVHTG 451
           L RHY  HTG
Sbjct: 107 LTRHYRTHTG 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,045
Number of Sequences: 438
Number of extensions: 2759
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)