Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20086
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 40 4e-04
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.82
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 28 1.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 2.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 5.8
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 26 5.8
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 5.8
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 5.8
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 5.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 5.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 7.6
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
+QVE+YF D NL DKFL + +DGWV
Sbjct: 69 KQVEFYFSDTNLPHDKFLWTTSQKNDGWV 97
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
Q+EYYF NL +D FL++ + D+G+V
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYV 358
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEGFVKK 522
P+ I TK R A + + +A LN+ TSG+ N++ R LP + +
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQ-NRTVRVDLPLDKKTILVD 675
Query: 523 YATDQFMRKDL 555
D +RKD+
Sbjct: 676 QICDMHIRKDM 686
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -3
Query: 506 SFISGSGCSGLRLTFLLSSETSNNPLVDLLRAFAM---TSVSSVSLARRLNFVRI 351
SF++GSG +R T L + + N L +LR + VS+ L R +++ I
Sbjct: 721 SFVAGSGSRQIRFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLDLRQHYIPI 775
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 516 KEICNRSIYAKGFAKDASL 572
KE+ NR + KGFA D S+
Sbjct: 561 KEVRNRKVVEKGFANDCSV 579
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 493 PEMNEGFVKKYATDQFMRKDL 555
P +E F KKYA+ +FM+ L
Sbjct: 424 PVQHEAFFKKYASKKFMKASL 444
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 156 MTEDKEVTVETNGQEENAKTENSEDE 233
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 333 SSNFICSCRNLSRC 292
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = -2
Query: 513 EALVHFWQWLFW---ITSHFFVI 454
EAL W+W +W I FFVI
Sbjct: 235 EALYDHWRWFYWMNMIVGGFFVI 257
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 239 IGYCDFRQVEYYFGDVNLHRDKF 307
+G DFR+ E ++HRDKF
Sbjct: 965 VGKVDFRKHEKKLNKASMHRDKF 987
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 338 IRHLILFVLAEIYLDVDLHHQNNIRLA 258
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,803
Number of Sequences: 5004
Number of extensions: 54880
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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