Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20086
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 42 6e-04
02_04_0575 - 24000191-24000302,24000710-24000788,24001017-240011... 38 0.006
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 35 0.052
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 35 0.052
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593... 35 0.069
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 34 0.12
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15... 33 0.28
03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781... 33 0.28
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 31 0.64
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 30 1.5
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.4
01_06_1026 + 33907465-33907661,33907699-33907741,33907938-339085... 29 3.4
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418... 29 4.5
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 6.0
06_01_0953 + 7344095-7344444,7344978-7345049,7345136-7345208,734... 28 7.9
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEGFVKK 522
P+ ++ F R+ KL++D +I AL TS L VS D K+VRR P E+N+ VKK
Sbjct: 123 PIGVIASFRRMKKLSQDLSIIEAALR--TSSKLVVSPDGKRVRRLHPLPNNELND--VKK 178
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 248 CD--FRQVEYYFGDVNLHRDKFLQEQIK 325
CD +QVEYYF D NL D+FL + +K
Sbjct: 88 CDRIVKQVEYYFSDENLPTDEFLIKFVK 115
>02_04_0575 -
24000191-24000302,24000710-24000788,24001017-24001164,
24001704-24002100,24002188-24002268,24002688-24002836,
24003152-24003294,24003643-24003795,24003912-24003990,
24004113-24004175
Length = 467
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVE+YF D NL RDKFL+E + + +DG V
Sbjct: 20 RQVEFYFSDSNLPRDKFLRETVEQREDGLV 49
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLDDGWVH 346
Q+E+YF NL D FL+ Q+ D GWVH
Sbjct: 427 QIEFYFSTNNLCHDTFLRRQMD-DQGWVH 454
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
+Q+EYYF D NL +D FL+ + D GWV
Sbjct: 313 KQIEYYFSDDNLCKDIFLRRHMD-DQGWV 340
>04_04_0385 -
24858580-24858721,24858772-24858850,24859155-24859302,
24859939-24860239,24860327-24860407,24860727-24860875,
24861073-24861215,24861404-24861556,24861664-24861742,
24861851-24861916
Length = 446
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVE+YF D NL RD FL++ + + +DG V
Sbjct: 21 RQVEFYFSDSNLPRDNFLRKTVEESEDGLV 50
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVR 471
P+ + FNRL K+T D +I AL + S LLEV + N + R
Sbjct: 362 PISKVADFNRLKKMTTDIQLIVEAL--ANSSLLEVQDGNMRRR 402
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
QVEYYF D NL D FL+ + + GWV
Sbjct: 335 QVEYYFSDSNLDHDNFLKSLMD-EHGWV 361
>07_01_0023 -
154119-154541,154697-154741,154875-154922,156104-156185,
156365-156444,156606-156677,156827-156921,157479-157515
Length = 293
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL ++ + ++ L ++ AL ST L VS+D KKVRR QP E ++
Sbjct: 14 PLSVIASWKKIKSLGATNQMLVKALRTSTK--LIVSDDGKKVRR--RQPFTEKHK 64
>03_05_0049 -
20277234-20277251,20277670-20277795,20278085-20278153,
20278233-20278280,20278413-20278494,20278583-20278662,
20278764-20278835,20278912-20279006,20280396-20280477,
20280604-20280963
Length = 343
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
P+ +++ + ++ + ++ NAL TS L VS+D KKVRR QP E ++
Sbjct: 149 PMSVISSWKKIKAMGVTNQLLVNALR--TSSKLVVSDDGKKVRR--AQPFTERHK 199
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRR 474
P+ ++ F ++ +L + +A L TS L VS+D K+VRR
Sbjct: 143 PMSVVASFRKIRELVSERSALAAVLR--TSAELVVSDDGKRVRR 184
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVH 346
+Q+E+YF NL D FL+ + D GWV+
Sbjct: 241 KQIEFYFSKDNLCTDVFLRRNMD-DQGWVN 269
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLD-DGWV 343
+QVEYYF D+NL + L I D +G+V
Sbjct: 125 KQVEYYFSDINLATTEHLMRFITKDPEGYV 154
>01_06_1026 +
33907465-33907661,33907699-33907741,33907938-33908512,
33910820-33911693
Length = 562
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 470 LTFLLSSETSNNPLVDLLRAFAMTSVSSVSLARRLNFVRISNGPIR 333
+T L S S+ L+D+L A+ + SVS AR+ + +S P R
Sbjct: 260 VTLLTSDSDSDGRLIDMLACAAVEADGSVSRARKRPRIGVSAEPAR 305
>04_03_0108 -
11340504-11340680,11341580-11341665,11341784-11341827,
11342339-11342428,11343762-11343928,11343986-11344010,
11344636-11344797,11345376-11345422,11345926-11345985,
11346094-11346465
Length = 409
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 427 TSGLLEVSEDNKKVRRNPEQPLPEMNEGFVKKYATDQFMRKDL 555
TS LLE NKKVR N +E F +TD F+RKD+
Sbjct: 339 TSPLLEDCSSNKKVRLN-------RSEHFEAFLSTDHFLRKDV 374
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 367 NRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLP-EMNEGFVKKYATDQFM 543
N+L ++V ++A N S SGLL E+ V E PLP E + G + D
Sbjct: 1881 NKLKNHFITSEVCSDATNLSASGLLTEEENIHNVEDQYEGPLPSEESSGCLDYPHDDHNS 1940
Query: 544 RKDLLKMP 567
K+ + P
Sbjct: 1941 EKEDIHQP 1948
>06_01_0953 +
7344095-7344444,7344978-7345049,7345136-7345208,
7345323-7345347,7345882-7345921,7346201-7346270,
7346475-7346558
Length = 237
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 483 TATARNERGLRKEICNRSIYAKGFAKDASLDDLLNYFKQFQ---EVENVIMRRYVRNPQR 653
+ TA N+ + N SI A GF K SLD L + FKQFQ EV N+ + + P
Sbjct: 134 SCTALNKFNVYGNELNGSIPA-GFQKLESLDLLEHIFKQFQVPAEVGNLKSVQVIAPPCF 192
Query: 654 NA 659
NA
Sbjct: 193 NA 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,652
Number of Sequences: 37544
Number of extensions: 297527
Number of successful extensions: 844
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -