Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20086
(679 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein. 66 4e-11
L32988-1|AAA21776.1| 390|Drosophila melanogaster La ribonucleop... 66 4e-11
AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p pro... 66 4e-11
AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-P... 66 4e-11
AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-P... 66 4e-11
AY061107-1|AAL28655.1| 595|Drosophila melanogaster LD09531p pro... 42 0.001
AF219009-1|AAF27644.1| 595|Drosophila melanogaster multi-sex-co... 42 0.001
AE014298-1312|AAF46473.1| 595|Drosophila melanogaster CG12058-P... 42 0.001
AE014297-4227|AAN14139.1| 965|Drosophila melanogaster CG14066-P... 33 0.27
AE014297-4226|AAF56783.3| 965|Drosophila melanogaster CG14066-P... 33 0.27
AE014297-4225|AAN14138.4| 1403|Drosophila melanogaster CG14066-P... 33 0.27
AY113653-1|AAM29658.1| 269|Drosophila melanogaster SD18087p pro... 31 1.4
AF221108-1|AAF35862.1| 1403|Drosophila melanogaster La related p... 31 1.4
AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p pro... 30 2.5
AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DN... 30 2.5
AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB... 30 2.5
AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA... 30 2.5
AE014297-3192|AAF56027.3| 1346|Drosophila melanogaster CG31158-P... 30 3.3
AE014297-3191|AAO41590.1| 1480|Drosophila melanogaster CG31158-P... 30 3.3
BT010118-1|AAQ22587.1| 961|Drosophila melanogaster AT27581p pro... 29 7.7
AY075500-1|AAL68310.1| 293|Drosophila melanogaster RE51713p pro... 29 7.7
AE014297-321|AAF51976.1| 293|Drosophila melanogaster CG1245-PA ... 29 7.7
AE014296-611|AAS64955.1| 958|Drosophila melanogaster CG11505-PC... 29 7.7
AE014296-610|AAF47745.1| 1521|Drosophila melanogaster CG11505-PA... 29 7.7
AE014296-609|AAG22237.2| 1531|Drosophila melanogaster CG11505-PB... 29 7.7
>U07652-1|AAA20518.1| 390|Drosophila melanogaster La/SS-B protein.
Length = 390
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL +L F RLA L+ D I ALNKS GL+E+SED +RR+PE+P+PE NE
Sbjct: 86 PLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVEYYFGD NL+RDKFL+EQI K +DGWV
Sbjct: 56 RQVEYYFGDANLNRDKFLREQIGKNEDGWV 85
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQRN 656
RKEI R+ YAKGF D+ + +LL++ + +V N+ MR P ++
Sbjct: 143 RKEIQERTAYAKGFPLDSQISELLDFTANYDKVVNLTMRNSYDKPTKS 190
>L32988-1|AAA21776.1| 390|Drosophila melanogaster La
ribonucleoprotein protein.
Length = 390
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL +L F RLA L+ D I ALNKS GL+E+SED +RR+PE+P+PE NE
Sbjct: 86 PLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVEYYFGD NL+RDKFL+EQI K +DGWV
Sbjct: 56 RQVEYYFGDANLNRDKFLREQIGKNEDGWV 85
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQRN 656
RKEI R+ YAKGF D+ + +LL++ + +V N+ MR++ P ++
Sbjct: 143 RKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKS 190
>AY075257-1|AAL68124.1| 390|Drosophila melanogaster AT22034p
protein.
Length = 390
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL +L F RLA L+ D I ALNKS GL+E+SED +RR+PE+P+PE NE
Sbjct: 86 PLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVEYYFGD NL+RDKFL+EQI K +DGWV
Sbjct: 56 RQVEYYFGDANLNRDKFLREQIGKNEDGWV 85
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQRN 656
RKEI R+ YAKGF D+ + +LL++ + +V N+ MR++ P ++
Sbjct: 143 RKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKS 190
>AE014134-3230|AAN11073.1| 390|Drosophila melanogaster CG10922-PB,
isoform B protein.
Length = 390
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL +L F RLA L+ D I ALNKS GL+E+SED +RR+PE+P+PE NE
Sbjct: 86 PLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVEYYFGD NL+RDKFL+EQI K +DGWV
Sbjct: 56 RQVEYYFGDANLNRDKFLREQIGKNEDGWV 85
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQRN 656
RKEI R+ YAKGF D+ + +LL++ + +V N+ MR++ P ++
Sbjct: 143 RKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKS 190
>AE014134-3229|AAF53885.1| 390|Drosophila melanogaster CG10922-PA,
isoform A protein.
Length = 390
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 507
PL +L F RLA L+ D I ALNKS GL+E+SED +RR+PE+P+PE NE
Sbjct: 86 PLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI-KLDDGWV 343
RQVEYYFGD NL+RDKFL+EQI K +DGWV
Sbjct: 56 RQVEYYFGDANLNRDKFLREQIGKNEDGWV 85
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +3
Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQRN 656
RKEI R+ YAKGF D+ + +LL++ + +V N+ MR++ P ++
Sbjct: 143 RKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKS 190
>AY061107-1|AAL28655.1| 595|Drosophila melanogaster LD09531p
protein.
Length = 595
Score = 41.5 bits (93), Expect = 0.001
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 489
PLEI FN++ LT+D IA AL S S LLE+ E KV+R + P
Sbjct: 93 PLEIFLTFNKIKTLTQDVQQIAKAL--SNSQLLELDETELKVKRRTKLP 139
Score = 34.7 bits (76), Expect = 0.12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLD 331
Q+E+YFGD NL +D+FL+ ++ D
Sbjct: 66 QMEFYFGDANLSKDRFLRRYVEQD 89
>AF219009-1|AAF27644.1| 595|Drosophila melanogaster multi-sex-combs
protein.
Length = 595
Score = 41.5 bits (93), Expect = 0.001
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 489
PLEI FN++ LT+D IA AL S S LLE+ E KV+R + P
Sbjct: 93 PLEIFLTFNKIKTLTQDVQQIAKAL--SNSQLLELDETELKVKRRTKLP 139
Score = 34.7 bits (76), Expect = 0.12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLD 331
Q+E+YFGD NL +D+FL+ ++ D
Sbjct: 66 QMEFYFGDANLSKDRFLRRYVEQD 89
>AE014298-1312|AAF46473.1| 595|Drosophila melanogaster CG12058-PA
protein.
Length = 595
Score = 41.5 bits (93), Expect = 0.001
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 489
PLEI FN++ LT+D IA AL S S LLE+ E KV+R + P
Sbjct: 93 PLEIFLTFNKIKTLTQDVQQIAKAL--SNSQLLELDETELKVKRRTKLP 139
Score = 34.7 bits (76), Expect = 0.12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 260 QVEYYFGDVNLHRDKFLQEQIKLD 331
Q+E+YFGD NL +D+FL+ ++ D
Sbjct: 66 QMEFYFGDANLSKDRFLRRYVEQD 89
>AE014297-4227|AAN14139.1| 965|Drosophila melanogaster CG14066-PB,
isoform B protein.
Length = 965
Score = 33.5 bits (73), Expect = 0.27
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN------PEQPLPEMN 504
P+ ++ F+R+ LT D VI NA+ +S LE+ E KVR P +PE+N
Sbjct: 55 PVTLIASFHRVLALTTDVAVIVNAIKESDK--LELFE-GYKVRTKTTPTTWPITEVPEVN 111
Query: 505 EGFVKKYAT 531
EG K T
Sbjct: 112 EGEPKAIGT 120
>AE014297-4226|AAF56783.3| 965|Drosophila melanogaster CG14066-PA,
isoform A protein.
Length = 965
Score = 33.5 bits (73), Expect = 0.27
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN------PEQPLPEMN 504
P+ ++ F+R+ LT D VI NA+ +S LE+ E KVR P +PE+N
Sbjct: 55 PVTLIASFHRVLALTTDVAVIVNAIKESDK--LELFE-GYKVRTKTTPTTWPITEVPEVN 111
Query: 505 EGFVKKYAT 531
EG K T
Sbjct: 112 EGEPKAIGT 120
>AE014297-4225|AAN14138.4| 1403|Drosophila melanogaster CG14066-PC,
isoform C protein.
Length = 1403
Score = 33.5 bits (73), Expect = 0.27
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN------PEQPLPEMN 504
P+ ++ F+R+ LT D VI NA+ +S LE+ E KVR P +PE+N
Sbjct: 493 PVTLIASFHRVLALTTDVAVIVNAIKESDK--LELFE-GYKVRTKTTPTTWPITEVPEVN 549
Query: 505 EGFVKKYAT 531
EG K T
Sbjct: 550 EGEPKAIGT 558
>AY113653-1|AAM29658.1| 269|Drosophila melanogaster SD18087p
protein.
Length = 269
Score = 31.1 bits (67), Expect = 1.4
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN------PEQPLPEMN 504
P+ ++ F+R+ LT D VI NA+ +S LE+ E KVR P +PE+
Sbjct: 55 PVTLIASFHRVLALTTDVAVIVNAIKESDK--LELFE-GYKVRTKTTPTTWPITEVPEVT 111
Query: 505 EGFVKKYAT 531
EG K T
Sbjct: 112 EGEPKAIGT 120
>AF221108-1|AAF35862.1| 1403|Drosophila melanogaster La related
protein protein.
Length = 1403
Score = 31.1 bits (67), Expect = 1.4
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN------PEQPLPEMN 504
P+ ++ F+R+ LT D VI NA+ +S LE+ E KVR P +PE+
Sbjct: 493 PVTLIASFHRVLALTTDVAVIVNAIKESDK--LELFE-GYKVRTKTTPTTWPITEVPEVT 549
Query: 505 EGFVKKYAT 531
EG K T
Sbjct: 550 EGEPKAIGT 558
>AY058592-1|AAL13821.1| 1311|Drosophila melanogaster LD28477p
protein.
Length = 1311
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 138 H*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNII 275
H RKI T+D ++T + +EE+ + + ED +L IF KS +
Sbjct: 382 HIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESV 427
>AF217802-1|AAG40586.1| 1311|Drosophila melanogaster xnp/atr-x DNA
helicase protein.
Length = 1311
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 138 H*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNII 275
H RKI T+D ++T + +EE+ + + ED +L IF KS +
Sbjct: 382 HIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESV 427
>AE014297-3805|AAN14055.1| 1311|Drosophila melanogaster CG4548-PB,
isoform B protein.
Length = 1311
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 138 H*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNII 275
H RKI T+D ++T + +EE+ + + ED +L IF KS +
Sbjct: 382 HIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESV 427
>AE014297-3804|AAF56471.1| 1311|Drosophila melanogaster CG4548-PA,
isoform A protein.
Length = 1311
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 138 H*RKIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNII 275
H RKI T+D ++T + +EE+ + + ED +L IF KS +
Sbjct: 382 HIRKIIKTKDLDLTTKEAAKEEDDRRKRIEDRQKLYNRIFVKSESV 427
>AE014297-3192|AAF56027.3| 1346|Drosophila melanogaster CG31158-PA,
isoform A protein.
Length = 1346
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 352 ILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQ 486
I +NR LT DT ++ L G + EDNK+ R+ +Q
Sbjct: 387 INNSYNRKDSLTNDTLLMCEELEPDEEGEYVLEEDNKQQRQRQQQ 431
>AE014297-3191|AAO41590.1| 1480|Drosophila melanogaster CG31158-PB,
isoform B protein.
Length = 1480
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 352 ILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQ 486
I +NR LT DT ++ L G + EDNK+ R+ +Q
Sbjct: 387 INNSYNRKDSLTNDTLLMCEELEPDEEGEYVLEEDNKQQRQRQQQ 431
>BT010118-1|AAQ22587.1| 961|Drosophila melanogaster AT27581p
protein.
Length = 961
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 477
P+ + +FN + KLT D ++I L +S + ++V + +VR N
Sbjct: 295 PIYTVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPN 337
>AY075500-1|AAL68310.1| 293|Drosophila melanogaster RE51713p
protein.
Length = 293
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 519 LYEALVHFWQWLFWITSHFFVIFRNLQ*STRRFVKGIC 406
LY LV+ ++W+ + H F+ F NL +T R C
Sbjct: 92 LYPQLVNSYKWMDKVHDHSFLAFNNLNQNTLRRSYNYC 129
>AE014297-321|AAF51976.1| 293|Drosophila melanogaster CG1245-PA
protein.
Length = 293
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 519 LYEALVHFWQWLFWITSHFFVIFRNLQ*STRRFVKGIC 406
LY LV+ ++W+ + H F+ F NL +T R C
Sbjct: 92 LYPQLVNSYKWMDKVHDHSFLAFNNLNQNTLRRSYNYC 129
>AE014296-611|AAS64955.1| 958|Drosophila melanogaster CG11505-PC,
isoform C protein.
Length = 958
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 477
P+ + +FN + KLT D ++I L +S + ++V + +VR N
Sbjct: 292 PIYTVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPN 334
>AE014296-610|AAF47745.1| 1521|Drosophila melanogaster CG11505-PA,
isoform A protein.
Length = 1521
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 477
P+ + +FN + KLT D ++I L +S + ++V + +VR N
Sbjct: 292 PIYTVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPN 334
>AE014296-609|AAG22237.2| 1531|Drosophila melanogaster CG11505-PB,
isoform B protein.
Length = 1531
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 477
P+ + +FN + KLT D ++I L +S + ++V + +VR N
Sbjct: 302 PIYTVARFNLVRKLTNDINLITEVLRESPN--VQVDDKGLRVRPN 344
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,599,412
Number of Sequences: 53049
Number of extensions: 541997
Number of successful extensions: 1737
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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