Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20086
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 67 9e-12
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 2.3
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 2.3
Z81069-3|CAB02989.1| 352|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z80216-1|CAB02287.2| 338|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC006625-7|AAK68274.1| 346|Caenorhabditis elegans Hypothetical ... 29 3.0
AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical ... 29 4.0
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 28 5.3
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 28 5.3
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 28 5.3
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 28 7.0
Z70284-7|CAA94284.2| 284|Caenorhabditis elegans Hypothetical pr... 27 9.3
U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock prot... 27 9.3
U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock prot... 27 9.3
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 27 9.3
K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock prot... 27 9.3
K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock prot... 27 9.3
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 9.3
AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical ... 27 9.3
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 27 9.3
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 67.3 bits (157), Expect = 9e-12
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +1
Query: 343 PLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
P+ + FNRLA +++DT+ IANA+ S SG++ VSEDN+K+RRN E P+PE
Sbjct: 47 PITTMLNFNRLASISKDTEKIANAVKNSGSGIISVSEDNQKIRRNEENPVPE 98
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
+Q+EYYFG++NL RDKFLQE++K DDGWV
Sbjct: 18 KQLEYYFGNINLPRDKFLQEKLKEDDGWV 46
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = +3
Query: 516 KEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRR 632
++I +R++Y KGF+ D LDD++ + QF E ENV+MRR
Sbjct: 105 QKIKHRTVYMKGFSTDTQLDDIIQWANQFGETENVLMRR 143
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI 322
+Q+EYYF + NL +D FL+ ++
Sbjct: 329 KQIEYYFSEENLQKDFFLRRKM 350
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 257 RQVEYYFGDVNLHRDKFLQEQI 322
+Q+EYYF + NL +D FL+ ++
Sbjct: 526 KQIEYYFSEENLQKDFFLRRKM 547
>Z81069-3|CAB02989.1| 352|Caenorhabditis elegans Hypothetical
protein F25H9.3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 582 LNYFKQFQEVENVIMRRYVRNPQRNAC 662
+NYF QF +E V RYV + Q ++C
Sbjct: 13 INYFTQFTNLEAVKCHRYVLHSQDDSC 39
>Z80216-1|CAB02287.2| 338|Caenorhabditis elegans Hypothetical
protein F10G8.1 protein.
Length = 338
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 317 QIKLDDGWVH*KFSQNSIALPN*QRTQMSSQMPLTNLRVDYW 442
++KL+ W H N +A P + + +Q PL D+W
Sbjct: 96 RVKLEGPWPHEYIHANYVATPTNPKRFICTQAPLEKTCADFW 137
>AC006625-7|AAK68274.1| 346|Caenorhabditis elegans Hypothetical
protein C55B7.3 protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 317 QIKLDDGWVH*KFSQNSIALPN*QRTQMSSQMPLTNLRVDYW 442
++KL+ W H N +A P + + +Q PL D+W
Sbjct: 96 RVKLEGPWPHEYIHANYVATPTNPKRFICTQAPLEKTCADFW 137
>AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical
protein ZK484.7 protein.
Length = 344
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 317 QIKLDDGWVH*KFSQNSIALPN*QRTQMSSQMPLTNLRVDYWRFLKITKK*DVI 478
++KL W H N ++ P+ R + +Q PL D+W ++ + +K D I
Sbjct: 95 RVKLHPPWPHDYIHANFVSTPSNPRRFICTQAPLDKSCADFW-YMCLQEKVDSI 147
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 144 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 248
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 144 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 248
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 100 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 132
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 144 RKIKMTEDKEVTVETNGQEENAKTENSEDETELDI 248
RKIK D +V +E +EE A +E+++DE LDI
Sbjct: 16 RKIKTEIDGDVKLEI--KEEPADSEDADDECPLDI 48
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 200 LLSIGFNSYLFVLGHFDFSLMENTF*FQKTSLLRLRS*D 84
L +IG ++F L HF F +++NTF S L + S D
Sbjct: 229 LTTIGLPLWMFYLEHFLFGVIKNTFLITLLSTLYIFSMD 267
>Z70284-7|CAA94284.2| 284|Caenorhabditis elegans Hypothetical
protein K07F5.8 protein.
Length = 284
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 317 QIKLDDGWVH*KFSQNSIALPN*QRTQMSSQMPLTNLRVDYW 442
++KL W H N ++ P + + +Q PL D+W
Sbjct: 34 RVKLGGAWPHEYIHANYVSTPTNPKRFICTQAPLEKTCADFW 75
>U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.11 protein.
Length = 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 92 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAIQGRSIPIQQ 136
>U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.1 protein.
Length = 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 92 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAIQGRSIPIQQ 136
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 92 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIPIQQ 136
>K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock protein
16-1a protein.
Length = 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 92 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAIQGRSIPIQQ 136
>K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock protein
16-1 protein.
Length = 146
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 93 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAIQGRSIPIQQ 137
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 549 GFAKDASLDDLLNYFKQFQEVENVI-MRRYVRNPQRNACSRVC 674
GF KD +L+D++ +F ++ N I +RR C C
Sbjct: 878 GFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLAC 920
>AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical
protein T20H9.4 protein.
Length = 261
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 159 TEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNIIL 278
TED TV NGQ++ + E ++ + D+A+ K IL
Sbjct: 52 TEDGGTTVHHNGQKKRIEGEQYKERSIKDLAVIFKHASIL 91
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 364 FNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPE 498
F+R+ L ED DV A A N S G L + K+ + P+ +
Sbjct: 92 FSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQGRSIPIQQ 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,316
Number of Sequences: 27780
Number of extensions: 298624
Number of successful extensions: 1133
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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