Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20084
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   1.8  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    27   1.8  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   2.4  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.6  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   7.4  

>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/56 (23%), Positives = 33/56 (58%)
 Frame = +1

Query: 16  IDKLGLSAKYNISTVIRQSFIGGYYSLVDENLKPLPDWWISVLYKKLVGNKVLQVQ 183
           + ++G +   N   +++++ IG   +L+      +P +W+SV+  +++G K +Q+Q
Sbjct: 383 LQEMGFNKGVNEYHILQKNAIG---NLIIAVAGYIPGYWVSVVLIEVMGRKWIQIQ 435


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 30  SIGKIQYIHRHSTKLYWWILQPSG 101
           +I +    + H+ KL+WW +  SG
Sbjct: 191 TIARYNSAYEHNNKLFWWYMSKSG 214


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 30  SIGKIQYIHRHSTKLYWWILQPSG 101
           ++ K    + H++K +WWI+  SG
Sbjct: 211 TVAKYNSAYIHNSKKFWWIMSESG 234


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/51 (21%), Positives = 30/51 (58%)
 Frame = +1

Query: 340 FMNIS*VHLQITENQKQYC*MAGHFIMNLIYTICGLIFIGMDAMFHYLHIL 492
           FM +  +HL  +++  + C  + ++ +++++ IC   F+ +   +++ HIL
Sbjct: 35  FMFVKSLHLMTSQHIFK-CLSSCNYALSILHNICLASFLYLSKCYYHTHIL 84


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 116 PYQIGGSVSCIKNWLEIKFY 175
           PY +   V C K W+  K Y
Sbjct: 253 PYNVSSMVDCSKTWIRQKHY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,592
Number of Sequences: 5004
Number of extensions: 63219
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)