Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20084
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0130 + 5791925-5792011,5792252-5792288,5792803-5792983,579... 69 4e-12
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393... 66 2e-11
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 62 3e-10
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654... 48 9e-06
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665... 44 8e-05
06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513 32 0.35
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 30 1.9
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 7.6
>03_02_0130 +
5791925-5792011,5792252-5792288,5792803-5792983,
5793156-5793304,5793433-5793666,5794082-5794271,
5794398-5794523,5794603-5794702,5794900-5795289
Length = 497
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = +1
Query: 4 HELW-IDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQ 177
+ +W +D+LG+++KYN RQ+ IGG+Y L+D + P PD++ ++L+ +L+G +VL
Sbjct: 290 NSIWYLDQLGMASKYNTKIFCRQTLIGGHYGLLDTQTFLPNPDYYSALLWHRLMGREVLS 349
Query: 178 VQCNCSRFQRLYIHCTNRK 234
V N R R Y HC ++
Sbjct: 350 VDINAPRKLRAYAHCRKQQ 368
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 345 EYIISAPSNNRKSKTILLNGWPLYY--ESNLHNLRPNIHRYGRYVSLPPYSIGFWVI 509
EY ++A + +SKT+LLNG PL + + + P + V L P SI F V+
Sbjct: 432 EYHLTAKDGDLQSKTMLLNGAPLELSDDGGVPAMSPALVAVNSPVYLAPTSIAFVVL 488
>06_01_0552 -
3935804-3936145,3936247-3936346,3936600-3936725,
3936802-3936991,3937105-3937338,3937640-3937788,
3937890-3938073,3938159-3938195,3938293-3938508
Length = 525
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +1
Query: 13 WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQVQCN 189
++D+LG+SAKY+ + RQS IGG Y L++ E +P PD++ ++L+ +L+G KVL N
Sbjct: 338 FLDQLGMSAKYDTKSYCRQSLIGGNYGLLNKETFQPNPDYYSALLWHRLMGTKVLSATFN 397
Query: 190 CSRFQRLYIHC 222
+ R Y HC
Sbjct: 398 GTNMIRTYAHC 408
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +1
Query: 13 WIDKLGLSAKYNISTVIRQSFIGGYYSLVDEN-LKPLPDWWISVLYKKLVGNKVLQVQCN 189
++D+LG+S+KY+ T RQ+ IGG Y L++ +P PD++ ++L+ +L+G KVL N
Sbjct: 348 YLDQLGMSSKYDTKTYCRQTLIGGNYGLLNTTTFEPNPDYYSALLWNRLMGTKVLSATFN 407
Query: 190 CSRFQRLYIHC 222
+ R Y HC
Sbjct: 408 GTNKIRAYAHC 418
>07_03_1148 -
24363952-24365086,24365178-24365361,24365438-24365474,
24365585-24365818
Length = 529
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +1
Query: 13 WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQVQCN 189
++D+LG+SA + RQ+ +GG Y L++ P PD++ ++L+ +L+G VL+
Sbjct: 347 YLDQLGMSAAHGTRVYCRQALVGGNYCLLNTTTFVPNPDYYGALLWHRLMGPVVLKAATT 406
Query: 190 C----SRFQRLYIHCTNRK 234
S + R Y HC+ K
Sbjct: 407 AGGGGSPYLRSYAHCSREK 425
>12_02_0880 +
23965602-23965614,23966150-23966370,23966467-23966503,
23966917-23967100,23967263-23967411,23967515-23967745,
23967850-23968039,23968124-23968433,23968658-23969050
Length = 575
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 13 WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQVQCN 189
++D+LG SAKY+ RQ+ IGG Y L+D E P PD+ Y+++ L C
Sbjct: 343 YLDQLGQSAKYDTKVYCRQTLIGGNYGLLDTETFVPNPDY-----YRQVFLYFALPQSC- 396
Query: 190 CSRFQRLYIHCTNRKY 237
F LY CT +Y
Sbjct: 397 ---FTTLYTFCTKPRY 409
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 345 EYIISAPSNNRKSKTILLNGWPLYY--ESNLHNLRPNIHRYGRYVSLPPYSIGFWV 506
EY ++ N ++T+LLNG PL + ++ +L P + + + P SI F V
Sbjct: 509 EYHLTPQDGNPFARTVLLNGAPLQLTGDGDIPSLPPVMVSVNSPIYVAPLSIAFVV 564
>06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513
Length = 395
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 282 MAKARFFLNGTALHGD--DLIIHEYIISAPSNNRKSKTILLNGWPLYYESNLHNLRP 446
M K F G A HG D I+HEY + PS+ S ++ L P YY S+ + P
Sbjct: 113 MRKTLVFYKGRAPHGQKSDWIMHEYRLDDPSSASASVSVNL---PSYYSSSSSSSSP 166
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 173 KTLFPTNFLYKTLIHQSGKGFRFSSTRL 90
+TLF +F + L+H SG+ R+S +R+
Sbjct: 384 RTLFEQSFFQRELVHHSGERHRYSMSRM 411
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 166 KVLQVQCNCSRFQRLYIHCTNRKYTNDTSA 255
KVL++ C C + I C R+Y T+A
Sbjct: 954 KVLEIACKCVKVDTTIISCGIREYHTSTNA 983
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,904,666
Number of Sequences: 37544
Number of extensions: 357454
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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