Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20083
         (676 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    27   0.54 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            24   5.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   5.0  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 99  GSTTSSRACKANNNMIFLVNNTLKLHAEN 13
           GST     C   +N +FL++  LK H+E+
Sbjct: 124 GSTYMCNYCNYTSNKLFLLSRHLKTHSED 152


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 14  FSACNLSVLFTKKIILLLALQARELVVDP 100
           F+  +L V   K II  L L+  EL+V+P
Sbjct: 618 FAEEDLQVFLAKNIIPKLELRLTELIVNP 646


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 594 PIVIGRHAHGDQYKAQDFVVPKPGKVE 674
           P  + + AH  Q + Q  V P+P K+E
Sbjct: 290 PPQLRQQAHQQQQRQQQKVRPRPDKIE 316


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,317
Number of Sequences: 2352
Number of extensions: 13863
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)