Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20081
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 89 4e-19
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 6e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 57 2e-09
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 2e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 2e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 2e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 49 5e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 47 3e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 5e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 8e-06
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 3e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 43 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 6e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 5e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 7e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 39 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.004
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.015
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.026
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.026
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.060
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 32 0.060
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.11
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.14
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.14
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.24
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.24
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.74
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.7
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 1.7
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 5.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.9
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 9.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 9.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+F+GGL+WETTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 190 GEHTINNKKVDPKKAKAR 243
EH ++ K +DPK+A R
Sbjct: 224 -EHHLDGKIIDPKRAIPR 240
Score = 82.2 bits (194), Expect = 6e-17
Identities = 37/87 (42%), Positives = 56/87 (64%)
Frame = +3
Query: 222 PKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 401
P+E T + FVGG+ + +++E RNFF++FG +L+ + DK + +GF F+T+E+E
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Query: 402 QVVNDLLKTPKRTIGGKEVDVKRATPK 482
V + P TI GK V+VKRATPK
Sbjct: 299 SAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 66.9 bits (156), Expect = 2e-12
Identities = 28/78 (35%), Positives = 53/78 (67%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++ + +
Sbjct: 166 FIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKE 224
Query: 435 RTIGGKEVDVKRATPKPD 488
+ GK +D KRA P+ +
Sbjct: 225 HHLDGKIIDPKRAIPREE 242
Score = 59.7 bits (138), Expect = 3e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 190 GEHTINNKKVDPKKA 234
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 193 EHT 201
++
Sbjct: 290 HNS 292
Score = 32.3 bits (70), Expect = 0.060
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 231 FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.8 bits (131), Expect = 2e-09
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+ +FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE 425
Query: 187 AGEHTI 204
H I
Sbjct: 426 MNGHFI 431
Score = 51.6 bits (118), Expect = 9e-08
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 189
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 190 GEHTINNKKVD 222
G I+ + V+
Sbjct: 325 GTKEIDGRMVN 335
Score = 46.0 bits (104), Expect = 5e-06
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 216 SRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 395
++P + + T FVG LS + D + F E+GTI+ + D + KG+ ++ FE
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
Query: 396 SEQVVN-DLLKTPKRTIGGKEVDVKRATPKPDGP 494
+ + + + I G+ V++ + P+P P
Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANP 346
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVG LS ++D++ F G I + +P D + KGF ++TF ++
Sbjct: 369 FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNG 428
Query: 435 RTIGGKEVDVKRATPKPDG 491
I G+ + +TP+ G
Sbjct: 429 HFIAGRPCRLDFSTPRTGG 447
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+ ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 187 AGEHTINNK--KVDPKK 231
++ + KV PK+
Sbjct: 115 LNGSMLHERPLKVTPKR 131
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
+VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +DK +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 193 E 195
E
Sbjct: 332 E 332
Score = 39.1 bits (87), Expect = 5e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKTP 431
FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Query: 432 KRTIGGKEVDVKRA-TPKP 485
K+ G+ + + RA + KP
Sbjct: 333 KKMPEGRTLRIMRAKSTKP 351
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Frame = +3
Query: 198 HHQQQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-- 371
H ++S + + FVG LS+ EIR+ F GT+ +V +PF + + +
Sbjct: 28 HASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLV 87
Query: 372 --GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGP 494
G F+TF +++ V+ ++T +T+ +E+ V++A P + P
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQP 131
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPESIDK 177
++FVG LS T E+R F G + + + +R G AF+ F E +DK
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 178 VMAAGEHTINNKKVDPKKAKARHGKILSE 264
+ T+N K +D ++ + + + E
Sbjct: 105 AI----ETLNGKTLDDREIVVQKARPVQE 129
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 49.2 bits (112), Expect = 5e-07
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMA 186
LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 187 AGEHTI-NNKKVDPKKAKARHGKILSEDSAVKSQMMK 294
HTI +K++ + GK + + +K + K
Sbjct: 154 F-HHTIYKERKINIELTAGGGGKTEARMNKIKEKNRK 189
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
FVG L + S + ++ F G + V +P DKT ++KG+ F+ F
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +3
Query: 204 QQQESRPKEG*STTWED-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 380
++ +S P EG D FV G++S + +DE++ FS+FGT+ V + + +GF
Sbjct: 87 KEPQSAP-EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145
Query: 381 FITFES-EQVVNDLLKTPKRTIGGKEVDV---KRATPKPDGPG 497
F++F + E+ + + + G+ ++V KR+ P PG
Sbjct: 146 FLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.4 bits (105), Expect = 3e-06
Identities = 33/97 (34%), Positives = 49/97 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSET 303
E + NKK+ HG+IL D A + + +T
Sbjct: 65 E--LKNKKL--------HGRILRLDFATPRKRSEVDT 91
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
+ +FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 277 DTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K K
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELK 67
Query: 435 -RTIGGKEVDVKRATPK 482
+ + G+ + + ATP+
Sbjct: 68 NKKLHGRILRLDFATPR 84
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 193 EHTI 204
+T+
Sbjct: 142 NYTL 145
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 237 STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVN 413
S T F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVR 379
Query: 414 DLLKTPKRTIGGKEVDV 464
L+ + G+ + V
Sbjct: 380 AYLELDAKPFQGRLLHV 396
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 45.6 bits (103), Expect = 6e-06
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
++ +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 99 YKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.2 bits (102), Expect = 8e-06
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 198
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 199 TINNKKVDPKKAKARHGKILSEDS 270
+ + V A+ R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 437
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 438 TIGGKEVDVKRATPK 482
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.0 bits (99), Expect = 2e-05
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI +AA
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS--VAA 152
Query: 190 GEHTINNKKVDPKKAKARH-GKILSEDSAVKSQMMKSETSSVNLELS*KWRCPLTKQRTK 366
I ++ + + + +L D ++ + K ++V + + L KQR
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSVVLDRDGSLCEEAFKKALNAVEKQFQEE---TLQKQRF- 208
Query: 367 ERASVSSHLNLS 402
ER SS LS
Sbjct: 209 EREDESSRQKLS 220
Score = 32.7 bits (71), Expect = 0.046
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 413
FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 97 FVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 3e-05
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/75 (28%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTP 431
FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q + +
Sbjct: 33 FVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 432 KRTIGGKEVDVKRAT 476
+ IG + V + RAT
Sbjct: 92 GKYIGSRPVKLSRAT 106
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
H +LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 193 EHTINNKKVDPKKAK 237
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 33.5 bits (73), Expect = 0.026
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKTP 431
FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69
Query: 432 KRTIGGKEVDVKRATPKP 485
+G +++ V+ + P
Sbjct: 70 NSELGPRKIRVEFPSNDP 87
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 180
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 428
+VG L + ++R +FS+FG +L + M ++ K + FI FES V N + +T
Sbjct: 108 YVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 186
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 187 AGEHTINNKKVDPKKAKARHGK 252
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 177
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG LS ++++I FS+ G I + M D+ GFCF+ + Q D LK
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 435 RT 440
RT
Sbjct: 95 RT 96
Score = 33.5 bits (73), Expect = 0.026
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 189
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 190 GEHTINNKKVDPKKAKARHG 249
+++ + + +A HG
Sbjct: 94 SRTSLDERII---RADLDHG 110
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 353
FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/78 (20%), Positives = 41/78 (52%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + + ++A
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSA 815
Query: 190 GEHTINNKKVDPKKAKAR 243
+ N+ ++ +K R
Sbjct: 816 AGKQLGNRVLNVVLSKPR 833
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 162
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 29.9 bits (64), Expect = 0.32
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
+VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPK 434
V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 103 VENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNN 162
Query: 435 RTIGGKE--VDVKR 470
+ G+E V +KR
Sbjct: 163 AELDGEELFVSIKR 176
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMP 344
FVGGLS +S++E++ F FG I+ V++P
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 153
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 123
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 219
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 220 DPKK 231
K+
Sbjct: 451 GKKR 454
Score = 33.5 bits (73), Expect = 0.026
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTI-------------LEVEMPFDKTKNQRKGFCFITFE 395
+VG + S +SD+EI FS++G + E PF KN + + F+ F
Sbjct: 20 YVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQ-YGFVKFV 78
Query: 396 SEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 485
+ + + ++LK K T+G +++ +K P
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 31.9 bits (69), Expect = 0.080
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFK 156
++VG + +D+E+ HF YG++ESI K P G + F+ F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 157 APESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 255
ESI++V+ A T+ +K+ K K+
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.026
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 437
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 438 T-IGGKEVDVKRATP 479
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.026
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLKT- 428
+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K+
Sbjct: 8 YVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKSY 67
Query: 429 -PKRTIGGKEVDVKRATP 479
T G ++ ++ A P
Sbjct: 68 LSNATFKGSKLRIEEARP 85
Score = 32.3 bits (70), Expect = 0.060
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 165
++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.3 bits (70), Expect = 0.060
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 49 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 225
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 226 KKAKARHGKILSEDSAVKSQMMKSETSSVNLEL 324
A+ R + SA+ SQ S +L +
Sbjct: 495 NYAEKREDR-KKRLSAIFSQSYPPVVPSPSLTI 526
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG------FCFITFESE 401
+VG L S ++ F FG + M + KN+ F FITFE++
Sbjct: 23 YVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKKNKSTDSKSPTLFAFITFENK 76
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 32.3 bits (70), Expect = 0.060
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 201 HQQQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 380
H ++S E S T ++ GL SD+ + + + FG + + D N KG+
Sbjct: 282 HDNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYG 340
Query: 381 FITFESEQ 404
F FE E+
Sbjct: 341 FACFEEEK 348
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 162
K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 310 DKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 187 A--GEHTINNK 213
G+ T NK
Sbjct: 370 GLDGKDTYGNK 380
Score = 30.7 bits (66), Expect = 0.18
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 313 YISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/76 (17%), Positives = 38/76 (50%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 437
V G+ E +++++ + F++FG + + + D+ KG+ I + + + +
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
Query: 438 TIGGKEVDVKRATPKP 485
++ ++++V A +P
Sbjct: 74 SLLDEKLEVDFAFLEP 89
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 282 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 461
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 462 V 464
+
Sbjct: 309 I 309
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 270 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 117
+F+G L +KE+ + FG +G+IE I + + N
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEM 341
F+G L S + EI F +FG I +++
Sbjct: 302 FIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 0.74
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK S + +AA
Sbjct: 214 LFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAA 265
Query: 193 EHTINNKKVDPKKAKARHGK 252
N ++ + K + GK
Sbjct: 266 ASPDGNVVIEGFRLKVQWGK 285
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 130 RGFAFIVFKAPESIDKVMAAGEHTINNKK 216
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 267 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 362
L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 958 LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 117
+F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEM 341
F+G L + I++DEIR FG I ++++
Sbjct: 209 FLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 117
+++G T + L++ F +GEIE +N + N
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 175 KVMAAGEHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSE 300
KV ++ E +N V P + H +ILS+ + +KS E
Sbjct: 1783 KVYSSEETPVNKILVSPSVSILDHNRILSQSTPIKSPQRAQE 1824
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 237 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 76
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEI 87
+LFVG + + T +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 377
F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 409 FLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 93 TLYFTVCSKMITELLICGLPAQPTNKKFLVP 1
T YF C K ++E LI P N K L+P
Sbjct: 258 TQYFGSCFKQLSEGLIFDTPGYRGNLKSLLP 288
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 330 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP-----KRTIGGKEVDVKRAT 476
+ E+P D ++ R +S+ N +LKTP K+T+ K++ AT
Sbjct: 43 DAELPQDAKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVNFKDISKDAAT 96
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 431
+V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 179 YVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 252 LPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTL 88
L M C +++ F +F S ++V +GLK++ SA V I + NTL
Sbjct: 1198 LAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTNTL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,102
Number of Sequences: 5004
Number of extensions: 44151
Number of successful extensions: 263
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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