Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20081
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 85 5e-17
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 78 4e-15
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 77 7e-15
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 77 7e-15
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 77 7e-15
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 77 7e-15
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 77 7e-15
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 76 2e-14
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 74 9e-14
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 74 9e-14
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 71 6e-13
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 70 1e-12
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 70 1e-12
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 69 2e-12
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 69 3e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 3e-12
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 1e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 1e-11
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 63 1e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 62 4e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 62 4e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 62 4e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 4e-10
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 61 5e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 7e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 60 9e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 60 9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 59 2e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 59 2e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 59 2e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 59 3e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 3e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 57 9e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 56 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 3e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 3e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 55 5e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 5e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 6e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 8e-08
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 53 2e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 53 2e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 53 2e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 52 2e-07
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 52 3e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 52 3e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 6e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 51 7e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 50 1e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 50 1e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 2e-06
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 49 3e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 49 3e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 49 3e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 4e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 47 9e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 47 9e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 46 2e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 46 2e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 2e-05
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 46 3e-05
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 46 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 3e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 46 3e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 45 4e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 45 4e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 45 4e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 45 4e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 45 4e-05
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 45 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 6e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 6e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 44 8e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 44 8e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 44 8e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 44 1e-04
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 44 1e-04
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 1e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 2e-04
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 43 2e-04
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 43 2e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 43 2e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 43 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 42 5e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 42 5e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 5e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 42 5e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 41 6e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 6e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 41 6e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 41 8e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 40 0.001
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 40 0.002
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 40 0.002
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g51300.2 68418.m06360 splicing factor-related contains simila... 39 0.002
At5g51300.1 68418.m06359 splicing factor-related contains simila... 39 0.002
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 39 0.002
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 39 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.007
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.007
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 38 0.007
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.007
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.007
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.007
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.010
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 36 0.017
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 36 0.017
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 36 0.017
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.023
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 36 0.023
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.030
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.030
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 35 0.039
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.039
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.039
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 35 0.039
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.039
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.052
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.052
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.052
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.052
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.052
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.069
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.069
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 34 0.091
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.091
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 34 0.091
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.091
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 33 0.21
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 32 0.28
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 32 0.28
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 32 0.28
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.28
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 32 0.37
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 32 0.37
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.37
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.37
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.48
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.48
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 31 0.64
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.64
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.64
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.85
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.85
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.1
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 30 1.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 1.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.5
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.5
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 29 2.0
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 2.0
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 29 2.6
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 2.6
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 3.4
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 3.4
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 3.4
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 6.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 6.0
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 6.0
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 6.0
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 28 6.0
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 28 6.0
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 28 6.0
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 28 6.0
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 28 6.0
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 27 7.9
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 7.9
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 7.9
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 7.9
At3g62490.1 68416.m07021 expressed protein hypothetical proteins... 27 7.9
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 27 7.9
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 7.9
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 84.6 bits (200), Expect = 5e-17
Identities = 38/84 (45%), Positives = 57/84 (67%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 190 GEHTINNKKVDPKKAKARHGKILS 261
+H+I+ ++VD K+A +R + +S
Sbjct: 67 -KHSIDTREVDVKRAMSREEQQVS 89
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/81 (39%), Positives = 52/81 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++D+E R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L
Sbjct: 113 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTF 172
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ GK+V+VKRA PK PG
Sbjct: 173 HDLSGKQVEVKRALPKDANPG 193
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/76 (36%), Positives = 46/76 (60%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGGL TD+E R +F YG + + + D T R RGF F+ F + +++D V+
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 187 AGEHTINNKKVDPKKA 234
H ++ K+V+ K+A
Sbjct: 170 KTFHDLSGKQVEVKRA 185
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGG+S E +D++R F+ +G + + + DK + +GF F+ F V++ +L+ K
Sbjct: 9 FVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ-EK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
+I +EVDVKRA + +
Sbjct: 68 HSIDTREVDVKRAMSREE 85
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-Q 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+N+ VD K+A +R
Sbjct: 66 DKHHIDNRDVDVKRAMSR 83
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++ DE R +F +G + + + D+T + +GF F++F+SE V+ +L
Sbjct: 113 FVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTF 172
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ GK+V+VKRA PK PG
Sbjct: 173 HDLNGKQVEVKRALPKDANPG 193
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K+V+ K+A
Sbjct: 168 LHKTFHDLNGKQVEVKRA 185
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/78 (33%), Positives = 48/78 (61%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + ++ +R +FS FG +L+V + +K + +GF F+ F V++ +L+ K
Sbjct: 9 FIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ-DK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I ++VDVKRA + +
Sbjct: 68 HHIDNRDVDVKRAMSREE 85
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 77.4 bits (182), Expect = 7e-15
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G T + FVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V
Sbjct: 105 GGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
Query: 411 NDLLKTPKRTIGGKEVDVKRATPKPDGP 494
+ +L + GK V+VKRA PK P
Sbjct: 165 DRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 73.7 bits (173), Expect = 9e-14
Identities = 34/78 (43%), Positives = 51/78 (65%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/78 (30%), Positives = 48/78 (61%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ + K
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I G+ V+ K+A P+ D
Sbjct: 68 HIIDGRTVEAKKAVPRDD 85
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 77.4 bits (182), Expect = 7e-15
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G T + FVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V
Sbjct: 105 GGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
Query: 411 NDLLKTPKRTIGGKEVDVKRATPKPDGP 494
+ +L + GK V+VKRA PK P
Sbjct: 165 DRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 73.7 bits (173), Expect = 9e-14
Identities = 34/78 (43%), Positives = 51/78 (65%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/78 (30%), Positives = 48/78 (61%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ + K
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I G+ V+ K+A P+ D
Sbjct: 68 HIIDGRTVEAKKAVPRDD 85
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 77.4 bits (182), Expect = 7e-15
Identities = 37/88 (42%), Positives = 55/88 (62%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G T + FVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V
Sbjct: 105 GGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV 164
Query: 411 NDLLKTPKRTIGGKEVDVKRATPKPDGP 494
+ +L + GK V+VKRA PK P
Sbjct: 165 DRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 73.7 bits (173), Expect = 9e-14
Identities = 34/78 (43%), Positives = 51/78 (65%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 168 LHKTFHELNGKLVEVKRA 185
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/78 (30%), Positives = 48/78 (61%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F ++ V++ + K
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I G+ V+ K+A P+ D
Sbjct: 68 HIIDGRTVEAKKAVPRDD 85
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 77.4 bits (182), Expect = 7e-15
Identities = 36/87 (41%), Positives = 55/87 (63%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 190 GEHTINNKKVDPKKAKARHGKILSEDS 270
+H I+ K V+ KKA R ++ S
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKS 92
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G S + + FVGGL+S +++ E + +F++FG I +V + +D + +GF FI+++SE+ V
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 411 NDLLKTPKRTIGGKEVDVKRATPK 482
+ +L+ + GK V+VK A PK
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPK 184
Score = 64.1 bits (149), Expect = 7e-11
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E++DKV+
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 187 AGEHTINNKKVDPKKA 234
H +N K V+ K A
Sbjct: 166 KTFHELNGKMVEVKLA 181
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++ K
Sbjct: 9 FIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-K 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I GK V+ K+A P+ D
Sbjct: 68 HIIDGKIVEAKKAVPRDD 85
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 77.4 bits (182), Expect = 7e-15
Identities = 36/87 (41%), Positives = 55/87 (63%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 190 GEHTINNKKVDPKKAKARHGKILSEDS 270
+H I+ K V+ KKA R ++ S
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKS 92
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G S + + FVGGL+S +++ E + +F++FG I +V + +D + +GF FI+++SE+ V
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160
Query: 411 NDLLKTPKRTIGGKEVDVKRATPK 482
+ +L+ + GK V+VK A PK
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPK 184
Score = 64.1 bits (149), Expect = 7e-11
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E++DKV+
Sbjct: 106 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Query: 187 AGEHTINNKKVDPKKA 234
H +N K V+ K A
Sbjct: 166 KTFHELNGKMVEVKLA 181
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++ K
Sbjct: 9 FIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-K 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I GK V+ K+A P+ D
Sbjct: 68 HIIDGKIVEAKKAVPRDD 85
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G + T + FVGGL S I++ E +N+F +FGTI +V + +D + +GF FITF+SE+ V
Sbjct: 117 GGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESV 176
Query: 411 NDLLKTPKRTIGGKEVDVKRATPK 482
+ +L + GK V+VKRA PK
Sbjct: 177 DMVLHKTFHELNGKMVEVKRAVPK 200
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 75 DKHIIDGRTVEAKKAVPR 92
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 180 LHKTFHELNGKMVEVKRA 197
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/92 (28%), Positives = 50/92 (54%)
Frame = +3
Query: 213 ESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
E + E S + F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 393 ESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 488
V ++ K I G+ V+ K+A P+ D
Sbjct: 64 ADPSVAERVI-MDKHIIDGRTVEAKKAVPRDD 94
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 73.7 bits (173), Expect = 9e-14
Identities = 30/78 (38%), Positives = 53/78 (67%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 66 EKHNIDGRLVEAKKAVPR 83
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G T + FVGGL S +++ + + +F +FGT +V + +D + +GF FIT++SE+ V
Sbjct: 103 GPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 411 NDLLKTPKRTIGGKEVDVKRATPKPDGPG 497
+L + GK V+VKRA PK PG
Sbjct: 163 EKVLLKTFHELNGKMVEVKRAVPKELSPG 191
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R K+FVGGL T+ + + +F +G + V D NT R RGF FI + + E+++KV
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 166 LLKTFHELNGKMVEVKRA 183
Score = 61.3 bits (142), Expect = 5e-10
Identities = 25/78 (32%), Positives = 50/78 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++ T K
Sbjct: 9 FIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I G+ V+ K+A P+ D
Sbjct: 68 HNIDGRLVEAKKAVPRDD 85
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 73.7 bits (173), Expect = 9e-14
Identities = 30/78 (38%), Positives = 53/78 (67%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++ +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 190 GEHTINNKKVDPKKAKAR 243
+H I+ + V+ KKA R
Sbjct: 66 EKHNIDGRLVEAKKAVPR 83
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/89 (38%), Positives = 53/89 (59%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G T + FVGGL S +++ + + +F +FGT +V + +D + +GF FIT++SE+ V
Sbjct: 103 GPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 411 NDLLKTPKRTIGGKEVDVKRATPKPDGPG 497
+L + GK V+VKRA PK PG
Sbjct: 163 EKVLLKTFHELNGKMVEVKRAVPKELSPG 191
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R K+FVGGL T+ + + +F +G + V D NT R RGF FI + + E+++KV
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 181 MAAGEHTINNKKVDPKKA 234
+ H +N K V+ K+A
Sbjct: 166 LLKTFHELNGKMVEVKRA 183
Score = 61.3 bits (142), Expect = 5e-10
Identities = 25/78 (32%), Positives = 50/78 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++ T K
Sbjct: 9 FIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEK 67
Query: 435 RTIGGKEVDVKRATPKPD 488
I G+ V+ K+A P+ D
Sbjct: 68 HNIDGRLVEAKKAVPRDD 85
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVGG+SWETT + ++FG +GE+ + TD TG RGF F+ F +KV+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 190 GEHTINNKKVDPKKAKARHGK 252
+H I+++KVD K+ R K
Sbjct: 127 -DHVIDDRKVDLKRTLPRGDK 146
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 237 STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 416
S T + FVGGL + +DE++N+F +G I+E ++ +D + +GF F+TF++E V+
Sbjct: 154 SKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
Query: 417 LLKTPK-RTIGGKEVDVKRATPKPDG 491
L K +G K+V++KRA PK G
Sbjct: 214 LFSDGKVHELGDKQVEIKRAEPKRTG 239
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 190 GE-HTINNKKVDPKKAKAR 243
G+ H + +K+V+ K+A+ +
Sbjct: 218 GKVHELGDKQVEIKRAEPK 236
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGG+S E + + N+F +FG +++ + D+ +GF F+TF V +L+
Sbjct: 69 FVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-ED 127
Query: 435 RTIGGKEVDVKRATPKPD 488
I ++VD+KR P+ D
Sbjct: 128 HVIDDRKVDLKRTLPRGD 145
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/102 (39%), Positives = 54/102 (52%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL+ ETT E HFG YGEI + D TG+ RGF F+ + +DKV+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-Q 101
Query: 190 GEHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVN 315
H I K+V+ K+ R G + S D K + SSV+
Sbjct: 102 DNHIIIGKQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVD 142
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGG+ S + DDE + FF +FG + E ++ D + + +GF F+T+ESE +V+ LL
Sbjct: 133 FVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
Query: 435 R-TIGGKEVDVKRATPK 482
R + G +V++K+A PK
Sbjct: 193 RIELSGTQVEIKKAEPK 209
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGG+ D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 187 AGEH-TINNKKVDPKKAKAR 243
G ++ +V+ KKA+ +
Sbjct: 190 KGNRIELSGTQVEIKKAEPK 209
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ E + E F ++G I + + D+ Q +GF F+T+ VV+ +++
Sbjct: 45 FVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DN 103
Query: 435 RTIGGKEVDVKRATPK 482
I GK+V++KR P+
Sbjct: 104 HIIIGKQVEIKRTIPR 119
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+F+GGL +TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-E 78
Query: 190 GEHTINNKKVDPKK 231
H IN K+V+ K+
Sbjct: 79 DTHVINGKQVEIKR 92
Score = 67.3 bits (157), Expect = 8e-12
Identities = 29/77 (37%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTP 431
FVGG+ S +++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL K
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Query: 432 KRTIGGKEVDVKRATPK 482
+ +V++K+A PK
Sbjct: 172 MIDMADTQVEIKKAEPK 188
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 187 AG------EHTINNKKVDPKKAKAR 243
G + + KK +PKK+ R
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNR 193
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GGL + ++ F ++G I + + D+ Q +GF FITF VV+ +++
Sbjct: 22 FIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DT 80
Query: 435 RTIGGKEVDVKRATPKPDG 491
I GK+V++KR PK G
Sbjct: 81 HVINGKQVEIKRTIPKGAG 99
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+F+GGL +TT+ HFG YGEI + D +TG+ RGF FI F P +DKV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-E 78
Query: 190 GEHTINNKKVDPKK 231
H IN K+V+ K+
Sbjct: 79 DTHVINGKQVEIKR 92
Score = 60.5 bits (140), Expect = 9e-10
Identities = 23/56 (41%), Positives = 44/56 (78%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
FVGG+ S +++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 187 AG 192
G
Sbjct: 169 KG 170
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GGL + ++ F ++G I + + D+ Q +GF FITF VV+ +++
Sbjct: 22 FIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DT 80
Query: 435 RTIGGKEVDVKRATPKPDG 491
I GK+V++KR PK G
Sbjct: 81 HVINGKQVEIKRTIPKGAG 99
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 190 GEHTINNKKVD 222
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 411 NDLLKTPKRTIGGKEVDVKRAT---PKPDGPGA 500
P I G+ + A+ P+P P A
Sbjct: 79 RRACADPTPIIDGRRANCNLASLGRPRPPLPYA 111
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/92 (34%), Positives = 56/92 (60%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R +K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ V
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 181 MAAGEHTINNKKVDPKKAKARHGKILSEDSAV 276
M + H +++K+V+ K+A + G + +AV
Sbjct: 178 MQSNFHELSDKRVEVKRAIPKEGIQSNNGNAV 209
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/82 (37%), Positives = 51/82 (62%)
Frame = +3
Query: 237 STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 416
S T + FVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 417 LLKTPKRTIGGKEVDVKRATPK 482
++++ + K V+VKRA PK
Sbjct: 177 VMQSNFHELSDKRVEVKRAIPK 198
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F + K +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-R 65
Query: 190 GEHTINNKKVDPKKAKARH 246
H I K VD +KA +H
Sbjct: 66 DTHFILGKPVDVRKAIRKH 84
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLKTP 431
FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L T
Sbjct: 9 FVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT- 67
Query: 432 KRTIGGKEVDVKRATPK 482
I GK VDV++A K
Sbjct: 68 -HFILGKPVDVRKAIRK 83
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G S + + FVGGL+S +++ E + +F++FG I +V + +D + +GF FI+++SE+ V
Sbjct: 28 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 87
Query: 411 NDLLKTPKRTIGGKEVDVKRATPK 482
+ +L+ + GK V+VK A PK
Sbjct: 88 DKVLQKTFHELNGKMVEVKLAVPK 111
Score = 64.1 bits (149), Expect = 7e-11
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E++DKV+
Sbjct: 33 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 92
Query: 187 AGEHTINNKKVDPKKA 234
H +N K V+ K A
Sbjct: 93 KTFHELNGKMVEVKLA 108
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 411 NDLLKTPKRTIGGKEVDVKRAT 476
P I G+ + A+
Sbjct: 79 RRACVDPTPIIDGRRANCNLAS 100
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/73 (38%), Positives = 46/73 (63%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 184 AAGEHTINNKKVD 222
A I+ +K +
Sbjct: 76 ADPNPVIDGRKAN 88
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 411 NDLLKTPKRTIGGKEVDVKRAT---PKPDGP 494
+ P I G++ + A+ P+P P
Sbjct: 72 TRAVADPNPVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/73 (38%), Positives = 46/73 (63%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 184 AAGEHTINNKKVD 222
A I+ +K +
Sbjct: 76 ADPNPVIDGRKAN 88
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 411 NDLLKTPKRTIGGKEVDVKRAT---PKPDGP 494
+ P I G++ + A+ P+P P
Sbjct: 72 TRAVADPNPVIDGRKANCNIASFGRPRPSPP 102
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 65.7 bits (153), Expect = 2e-11
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
H K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 184 AAGEHTINNKKVD 222
A I+ +K +
Sbjct: 76 ADPNPVIDGRKAN 88
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF
Sbjct: 12 GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71
Query: 411 NDLLKTPKRTIGGKEVDVKRAT---PKPDGP 494
+ P I G++ + A+ P+P P
Sbjct: 72 TRAVADPNPVIDGRKANCNIASFGRPRPSTP 102
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+ F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+ +AA
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 190 -GEHTINNKKVDPKKAKARHG 249
++ + + KA+ G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQG 88
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ G+ + V +A P G G
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAG 91
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ + +
Sbjct: 25 FVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
Query: 435 RTIGGKEVDVKRA 473
I G+ + A
Sbjct: 85 PVIDGRRANCNLA 97
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/78 (39%), Positives = 43/78 (55%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV + S +S+ + R+ F +G I ++ MP D Q +G FITF S V DL++
Sbjct: 94 FVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DT 152
Query: 435 RTIGGKEVDVKRATPKPD 488
+GG V V RATPK D
Sbjct: 153 HDLGGTTVAVDRATPKED 170
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVG L E S D++R++F FG I + +P D ++ +GF F+TF +E V D +
Sbjct: 243 FVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRS 301
Query: 435 RTIGGKEVDVKRATPKPD-GPGA 500
I G+EV + ATP + GP A
Sbjct: 302 HEICGQEVAIDSATPLDEAGPSA 324
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-K 62
Query: 190 GEHTINNKKVDPKKA 234
GEH + N+ ++ K A
Sbjct: 63 GEHFLGNRILEVKVA 77
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVG L E + +LRD+FG +G I+ + DP RGF F+ F D+V A
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-AR 299
Query: 190 GEHTINNKKV 219
H I ++V
Sbjct: 300 RSHEICGQEV 309
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/75 (28%), Positives = 45/75 (60%)
Frame = +3
Query: 264 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 443
G+ +I D ++++ S+FG + + + D++ + +GF ++TF S + + LK + +
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK-GEHFL 67
Query: 444 GGKEVDVKRATPKPD 488
G + ++VK ATPK +
Sbjct: 68 GNRILEVKVATPKEE 82
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TP 431
FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97
Query: 432 KRTIGGKEVDVKRATPKPDGP 494
+ + G+++ V AT + P
Sbjct: 98 GKELNGRQIRVNLATERSSAP 118
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TP 431
FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97
Query: 432 KRTIGGKEVDVKRATPKPDGP 494
+ + G+++ V AT + P
Sbjct: 98 GKELNGRQIRVNLATERSSAP 118
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 190 GEHTINNKKVDPKKAKAR 243
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/81 (27%), Positives = 46/81 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 37 FVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDG 96
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V AT + G G
Sbjct: 97 QDLHGRRIRVNYATERGSGFG 117
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK + + +
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 193 EHTINNKKVDPKKAKARHGK 252
E + N+ V A + GK
Sbjct: 470 EKRMYNRIVVCNLASEKPGK 489
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 190 GEHTINNKKVD 222
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF + P
Sbjct: 10 FVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPA 69
Query: 435 RTIGGKEVDVKRA 473
I G+ + A
Sbjct: 70 PVIDGRRANCNLA 82
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 190 GEHTINNKKVD 222
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF + P
Sbjct: 10 FVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPA 69
Query: 435 RTIGGKEVDVKRA 473
I G+ + A
Sbjct: 70 PVIDGRRANCNLA 82
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.5 bits (140), Expect = 9e-10
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
H K+FV GL WETT + L F YGEIE V D TG+++GF F++FK + + +
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 184 AAGEHTINNKKVDPKKAK---ARHGKILSEDSAVKSQM 288
+ I N+ + A A GK + VK M
Sbjct: 163 KEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISM 200
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL E + + + F +G I E + DK + KGF F+ F++ + + LK PK
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPK 166
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ I + + A+ P G
Sbjct: 167 KRILNRTATCQLASMGPAASG 187
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.5 bits (140), Expect = 9e-10
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
H K+FV GL WETT + L F YGEIE V D TG+++GF F++FK + + +
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 184 AAGEHTINNKKVDPKKAK---ARHGKILSEDSAVKSQM 288
+ I N+ + A A GK + VK M
Sbjct: 163 KEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISM 200
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL E + + + F +G I E + DK + KGF F+ F++ + + LK PK
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPK 166
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ I + + A+ P G
Sbjct: 167 KRILNRTATCQLASMGPAASG 187
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTP 431
F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97
Query: 432 KRTIGGKEVDVKRATPKPDGPGA 500
+ + G+ + V A +P P A
Sbjct: 98 GKELNGRHIRVNPANDRPSAPRA 120
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTP 431
F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E + +
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97
Query: 432 KRTIGGKEVDVKRATPKPDGPGA 500
+ + G+ + V A +P P A
Sbjct: 98 GKELNGRHIRVNPANDRPSAPRA 120
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 47.2 bits (107), Expect = 9e-06
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 401
F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 44 FIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK + +
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 193 EHTINNKKVDPKKAKA-RHGKILSEDSAVKS 282
E + N+ V A+ GK + V+S
Sbjct: 225 EKRMYNRTVSCLPARPFNSGKPREQQQPVES 255
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK P+
Sbjct: 166 FVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPE 225
Query: 435 RTIGGKEVDVKRATPKPDG 491
+ + + V A P G
Sbjct: 226 KRMYNRTVSCLPARPFNSG 244
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMA 186
+ FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 187 AGEHTINNKKVDPKKAKAR 243
++ + + +A++R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A + G G
Sbjct: 71 GQDLDGRSITVNEAQSRGSGGG 92
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMA 186
+ FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 187 AGEHTINNKKVDPKKAKAR 243
++ + + +A++R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A + G G
Sbjct: 71 GQDLDGRSITVNEAQSRGSGGG 92
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + +++ ++
Sbjct: 10 FVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMH 69
Query: 435 -RTIGGKEVDVKRATPK 482
R G + + V RA PK
Sbjct: 70 GRDFGDRVISVNRAEPK 86
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 190 ------GEHTINNKKVDPK 228
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMA 186
++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 187 AGEHTINNKKVDPKKAKARHG 249
+ NK + KA+ + G
Sbjct: 73 MHGRELGNKVISVNKAEPKVG 93
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TP 431
FVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
Query: 432 KRTIGGKEVDVKRATPKPDG 491
R +G K + V +A PK G
Sbjct: 75 GRELGNKVISVNKAEPKVGG 94
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMA 186
++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 187 AGEHTINNKKVDPKKAKARHG 249
+ NK + KA+ + G
Sbjct: 73 MHGRELGNKVISVNKAEPKVG 93
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TP 431
FVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
Query: 432 KRTIGGKEVDVKRATPKPDG 491
R +G K + V +A PK G
Sbjct: 75 GRELGNKVISVNKAEPKVGG 94
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 184 AAGEHTINNKKVD 222
I+ ++ +
Sbjct: 72 VDATPVIDGRRAN 84
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 411 NDLLKTPKRTIGGKEVDVKRAT 476
I G+ + A+
Sbjct: 68 RSACVDATPVIDGRRANCNLAS 89
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 184 AAGEHTINNKKVD 222
I+ ++ +
Sbjct: 72 VDATPVIDGRRAN 84
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 411 NDLLKTPKRTIGGKEVDVKRAT 476
I G+ + A+
Sbjct: 68 RSACVDATPVIDGRRANCNLAS 89
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 184 AAGEHTINNKKVD 222
I+ ++ +
Sbjct: 72 VDATPVIDGRRAN 84
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 231 G*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 410
G +T + FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 411 NDLLKTPKRTIGGKEVDVKRAT 476
I G+ + A+
Sbjct: 68 RSACVDATPVIDGRRANCNLAS 89
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V GLS T+++L DHF G++ +++ DP T SRGF FI K+ ++ + +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 193 EHTI-NNKKVDPKKAKARHGK 252
+H++ + + +KA+ R G+
Sbjct: 137 DHSVLQGRVITVEKARRRRGR 157
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 78 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 137
Query: 435 RTI-GGKEVDVKRA 473
++ G+ + V++A
Sbjct: 138 HSVLQGRVITVEKA 151
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 181 MAAGEHTINNKKVDPKKA 234
HTI+ + V+ K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V GL + + ++F FG I+ ++ D + KGF F+TF + + P
Sbjct: 12 YVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPN 71
Query: 435 RTIGGKEVDVKRA 473
TI G+ V+ K A
Sbjct: 72 HTIDGRTVNCKLA 84
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 190 GEHTINNKKVD 222
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A + G G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG 90
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 190 GEHTINNKKVD 222
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A + G G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG 90
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 190 GEHTINNKKVD 222
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 435 -RTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A + G G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG 90
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-P 431
F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 43 FIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALD 102
Query: 432 KRTIGGKEVDVKRATPKPDGPG 497
R + G+ V V A + G G
Sbjct: 103 GRDLHGRVVKVNYANDRTSGGG 124
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 190 GEHTINNKKVDPKKA 234
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K P
Sbjct: 16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPN 75
Query: 435 RTIGGKEVDVKRA 473
TI G+ + K A
Sbjct: 76 PTIEGRITNCKLA 88
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 190 GEHTINNKKVD 222
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+ + +
Sbjct: 20 FVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDST 79
Query: 435 RTIGGKEVDVKRAT 476
I G+ + A+
Sbjct: 80 PIINGRRANCNLAS 93
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/104 (28%), Positives = 51/104 (49%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA- 278
Query: 190 GEHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVNLE 321
T+N +V+ + + + + + + ET +LE
Sbjct: 279 ---TMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLE 319
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
+VG L I+ E+ F E GT+++V++ +DK ++ +GF F+T S E+ +
Sbjct: 119 YVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFN 178
Query: 432 KRTIGGKEVDV 464
IGG+ V V
Sbjct: 179 SSQIGGRTVKV 189
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+L+VG L + T EL FG G + + + D T RSRGF F+ + E + M
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 174
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 428
+ G L ++ +++ F + +L ++ +++ + +GF FI+FES + V L T
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 159
H K+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V +S++I ++ FFS FG I E + DK + KGF + S + L+ P
Sbjct: 230 YVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPH 289
Query: 435 RTIGGKEVDVKRATPKP 485
+T G + +A P
Sbjct: 290 KTFEGHVLHCHKANDGP 306
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 190 GEHTINNKKVDPKKA 234
T + KA
Sbjct: 288 PHKTFEGHVLHCHKA 302
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 37 FVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S +
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 181 MAAGEHTINNKKVDPKKAKA 240
+ + I+ + + A A
Sbjct: 70 LQNSKPIIDGRTTNCNLASA 89
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVG L+ + D++R +F +FG +++ + + + KG+ FITF L+ K
Sbjct: 15 FVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSK 74
Query: 435 RTIGGKEVDVKRAT 476
I G+ + A+
Sbjct: 75 PIIDGRTTNCNLAS 88
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/65 (30%), Positives = 42/65 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 435 RTIGG 449
+ GG
Sbjct: 69 GSGGG 73
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+LFV L + T++EL +HF +G+I +++ D T RSRG A+I++ PE + M
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KL V +++E T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVFKAPESIDK 177
L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F + E+
Sbjct: 571 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 630
Query: 178 V 180
V
Sbjct: 631 V 631
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 159
H K+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+ P
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 435 RTIGGKEVDVKRAT--PKP 485
+T G + ++A PKP
Sbjct: 308 KTFEGHILHCQKAIDGPKP 326
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL + + + F ++G I + + FDK + KG+ FI ++S + LK P+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 435 RTIGGKEVDVKRATPKPDGPGA 500
+ IG + + A+ P GA
Sbjct: 203 KKIGSRMTACQLASKGPVFGGA 224
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 187 AGEHTINNKKVDPKKA 234
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 159
H K+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+ P
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 435 RTIGGKEVDVKRAT--PKP 485
+T G + ++A PKP
Sbjct: 308 KTFEGHILHCQKAIDGPKP 326
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL + + + F ++G I + + FDK + KG+ FI ++S + LK P+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 435 RTIGGKEVDVKRATPKPDGPGA 500
+ IG + + A+ P GA
Sbjct: 203 KKIGSRMTACQLASKGPVFGGA 224
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 187 AGEHTINNKKVDPKKA 234
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 159
H K+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+ P
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 435 RTIGGKEVDVKRAT--PKP 485
+T G + ++A PKP
Sbjct: 308 KTFEGHILHCQKAIDGPKP 326
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV GL + + + F ++G I + + FDK + KG+ FI ++S + LK P+
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 435 RTIGGKEVDVKRATPKPDGPGA 500
+ IG + + A+ P GA
Sbjct: 203 KKIGSRMTACQLASKGPVFGGA 224
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 187 AGEHTINNKKVDPKKA 234
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-P 431
+VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 432 KRTIGGKEVDVKRATPKP 485
+ G+++ V A +P
Sbjct: 267 GADLDGRQIRVSEAEARP 284
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V AA
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAA 148
Query: 190 GEHTINNKKVDPKKAKARHG 249
+ N ++D + + G
Sbjct: 149 AQQ-FNGYELDGRPLRVNAG 167
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+++VG LSW D L F G++ V D ++GRS+GF F+ + + + + + +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 190 GEHT-INNKKVDPKKAKAR 243
+ ++ +++ +A+AR
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 94 FVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V GLS T+++L DHF G++ +++ DP T SRGF FI K+ ++ + +
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 193 EHTINNKKV 219
+H++ +V
Sbjct: 107 DHSVLQGRV 115
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 48 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 107
Query: 435 RTI-GGKEVDVKR 470
++ G+ + V++
Sbjct: 108 HSVLQGRVITVEK 120
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 171
+ FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E D ++T
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAI 102
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ G+E+D + T + G G
Sbjct: 103 DRMNGQELDGRNITAQARGSG 123
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG L D +RN FS+FGTI+ + D+ + + F F++F S + + L
Sbjct: 215 YVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNG 274
Query: 435 RTIGGKEVDVKRATPKPD 488
G+ + V+ K +
Sbjct: 275 TQYEGRRIIVREGIEKSE 292
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 52 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 201
+L D F +G + S+ V +P TG SRG ++ + S +A+ + T
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGT 172
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 190 -GEHTINNKKVDPKKAKARHGKILSEDSAVKSQMMK 294
+N + AK LS D +++ K
Sbjct: 92 MNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKK 127
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 34 YIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93
Query: 435 -RTIGGKEVDVKRATPKPDGP 494
+ + G + V A P P
Sbjct: 94 GQELNGFNISVNVAKDWPSLP 114
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
+V GLS ++D +R+ F +FG ++ + M DK N+ KGF F+ +E+ E+ + +
Sbjct: 80 YVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMH 139
Query: 432 KRTIGGKEVDVKRATPKPD 488
+ + G+ + V+ A + D
Sbjct: 140 GKFLDGRVIFVEEAKTRSD 158
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 190 GEH--TINNKKVDPKKAKAR 243
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.8 bits (116), Expect = 7e-07
Identities = 34/91 (37%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
H +FVG LS E TD L D F A+ V D TGRSRGF F+ F+ + D
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ--DAQT 204
Query: 184 AAGEHTINNKKVDPKKAK---ARHGKILSED 267
A E +N K V ++ + A G ED
Sbjct: 205 AINE--MNGKWVSSRQIRCNWATKGATFGED 233
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +3
Query: 225 KEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+E S+ + FVG LS E++D + + FS F + + + +D+ + +GF F++F ++Q
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 193 EHTINNKKVDPKK 231
+N KK D K+
Sbjct: 285 ---LNGKKFDDKE 294
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
L+V L TD++LR+ F +G I S V DP +G S+G F+ F A +V+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVL 385
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VG L + TD +L D+F ++ S+ V D T S G+ ++ + + +K M
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 193 EHTINNKKV 219
++ N K+
Sbjct: 108 NYSYLNGKM 116
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V L ++D+++R F+EFGTI ++ D + KG F+ F + + +L
Sbjct: 331 YVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMN 389
Query: 435 -RTIGGKEVDVKRATPKPD 488
+ +GGK + V A K +
Sbjct: 390 GKMVGGKPLYVALAQRKEE 408
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/48 (20%), Positives = 26/48 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
+VG L ++D ++ ++F+E ++ V + D N G+ ++ + +
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSN 96
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V++ P D A
Sbjct: 375 DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
Query: 187 A 189
A
Sbjct: 435 A 435
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 378 FVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALN 437
Query: 435 R-TIGGKEVDVKRA-----TPKPD 488
+G K + V+RA PKP+
Sbjct: 438 GIKMGDKTLTVRRAIQGAIQPKPE 461
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 190 GEHTINNKKVD 222
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-P 431
FVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 39 FVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQ 98
Query: 432 KRTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A G G
Sbjct: 99 NKELDGRIIGVHPADSGGGGGG 120
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KL+VG L + ++ +LR F A+G +E + + DP TG+ +GF FI F E A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 190 --GEHTINNKKVDPKKAKARHGKILSEDSAVKS 282
G+ I + + K + I ++DSA KS
Sbjct: 326 LNGKLEIAGRTI---KVSSVSDHIGTQDSAPKS 355
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
+VG L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 186
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 187 AGEHTINNKKVDPKKAKAR 243
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S ++ L++
Sbjct: 37 FIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96
Query: 432 KRTIGGKEVDVKRATPK 482
+ + G+ + V A K
Sbjct: 97 GQQLNGRTIFVDYAKAK 113
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 190 GEHTINNKKVDPKKA 234
I+ K ++ K A
Sbjct: 228 PVKVIDGKHLNCKLA 242
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK P
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137
Query: 435 RTIGGKEVDVKRATPKPDGPGA 500
+ I G+ + A G G+
Sbjct: 138 KKIDGRVTVTQLAASGNQGTGS 159
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V + ++ D + N F +G + E + FDK + +GF +++ + L P
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229
Query: 435 RTIGGKEVDVKRATPKPDG 491
+ I GK ++ K A G
Sbjct: 230 KVIDGKHLNCKLAVDGKKG 248
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
K++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 190 GEHTINNKKVDPKKA 234
I+ K ++ K A
Sbjct: 228 PVKVIDGKHLNCKLA 242
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK P
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS 137
Query: 435 RTIGGKEVDVKRATPKPDGPGA 500
+ I G+ + A G G+
Sbjct: 138 KKIDGRVTVTQLAASGNQGTGS 159
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V + ++ D + N F +G + E + FDK + +GF +++ + L P
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229
Query: 435 RTIGGKEVDVKRATPKPDG 491
+ I GK ++ K A G
Sbjct: 230 KVIDGKHLNCKLAVDGKKG 248
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 252 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 311
Query: 435 -RTIGGKEVDVKRATPKP 485
+ G+++ V A +P
Sbjct: 312 GADLDGRQIRVSEAEARP 329
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 186
+L+VG LSW D L + F G++ V D ++GRS+GF F+ + + + K + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 187 AGEHTINNKKVDPKKAKAR 243
++ +++ +A+AR
Sbjct: 310 LNGADLDGRQIRVSEAEAR 328
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
KLFVG LS+ +L F + G +E + V D TGRSRGF F+ ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Query: 435 -RTIGGKEVDVKRATPKP 485
+ G+++ V A +P
Sbjct: 320 GADLDGRQIRVSEAEARP 337
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 186
+L+VG LSW D L + F G++ V D ++GRS+GF F+ + + + K + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 187 AGEHTINNKKVDPKKAKAR 243
++ +++ +A+AR
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
KLFVG LS+ +L F + G +E + V D TGRSRGF F+ ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/50 (30%), Positives = 33/50 (66%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 39 YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
KL+ G L + L + E + V + +TG+SRGFAF+ E + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+ G L + + +F VE+ +++ Q +GF F+T + + N ++
Sbjct: 88 YFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLD 147
Query: 435 RT-IGGKEVDVKRA-TPKPD 488
T G+ + V A PKP+
Sbjct: 148 GTEYLGRALKVNFADKPKPN 167
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/102 (31%), Positives = 46/102 (45%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V L TD +LR+HF +G I S V DP +G SRG F+ F PE + +
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT-- 385
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVNL 318
+N K + K + ED + Q S+ VN+
Sbjct: 386 --EMNGKMIVTKPLYVALAQ-RKEDRKARLQAQFSQMRPVNM 424
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTP 431
+V LS +SD+E+ F EFG + D + + KGF F+ FE S+ +
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 432 KRTIGGKEVDVKRATPKPD 488
+T KE V +A K +
Sbjct: 286 GKTFDDKEWFVGKAQKKSE 304
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+F+ L K L + F A+G I S V DP +G+S+G+ F+ + E+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEA 185
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
+V L ++DD++R F+ FGTI ++ D + R G F+ F + E+ + +
Sbjct: 330 YVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPEEATRAITEMN 388
Query: 432 KRTIGGKEVDVKRATPKPD 488
+ I K + V A K D
Sbjct: 389 GKMIVTKPLYVALAQRKED 407
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 190 GE-HTINNKKVDPK 228
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/81 (28%), Positives = 43/81 (53%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S +
Sbjct: 6 YVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS--- 62
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
+ GKE++ +R + K G G
Sbjct: 63 -GMDGKELNGRRVSVKLFGIG 82
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALA 220
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VGG+ + ++DEIR++F G I++V+ G FITF++E L +
Sbjct: 164 YVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFDR 223
Query: 435 RTIGGKEVDVKR 470
+G + + +++
Sbjct: 224 AAMGDRYLTIQQ 235
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/72 (25%), Positives = 39/72 (54%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+ +
Sbjct: 261 YNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIAL 319
Query: 184 AAGEHTINNKKV 219
+ I + V
Sbjct: 320 KLDQQVICGRPV 331
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/69 (40%), Positives = 36/69 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV LS+ +D +R FS FG I E + D + KGF FITF+SE LK
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK--- 66
Query: 435 RTIGGKEVD 461
++ GK VD
Sbjct: 67 -SLDGKIVD 74
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/51 (43%), Positives = 26/51 (50%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
H +FVG LS E TD L F + V D TGRSRGF F+ F+
Sbjct: 143 HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +3
Query: 225 KEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+E S+ + FVG LS E++D + FS F + + + +D+ + +GF F++F ++Q
Sbjct: 137 REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S E+ LL+
Sbjct: 24 FVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELN 83
Query: 432 KRTIGGKEV 458
+ + G+ V
Sbjct: 84 AQLVDGRVV 92
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +3
Query: 249 EDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 425
E F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V ++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 153
+LF+G + T+ E R G +E+I + DP NT R+RGFAF+++
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 30.7 bits (66), Expect = 0.85
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V + T+ ++L++ F +GE+ I T P G R F F+ + S K +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKI--VTPPGKGGKRDFGFVHYAERSSALKAVKDT 351
Query: 193 E-HTINNKKVDPKKAK 237
E + +N + ++ AK
Sbjct: 352 ERYEVNGQPLEVVLAK 367
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+ GLS S+ +R F FG ++EV++ DK + KG+ F+ + +E+ LK
Sbjct: 285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMN 344
Query: 435 -RTIGGKEVDVKRATPKP 485
+ I G + V A KP
Sbjct: 345 GKIINGWMIVVDVAKTKP 362
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK- 434
V GL I++ ++ FSE G + + +K ++ +GF F+ F ++ VN ++
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 435 RTIGGKEVDVKRATPKP 485
T+GG+ + VK+A +P
Sbjct: 84 STVGGRRITVKQAAHRP 100
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/101 (24%), Positives = 53/101 (52%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK ++ ++A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVN 315
+ T + V K + + + + +A ++ K+E +V+
Sbjct: 623 D-TASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVD 662
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGE 195
V GL + T+ +L + F G + + T+ + RGFAF+ F E +++ +
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 196 HTINNKKVDPKKAKAR 243
T+ +++ K+A R
Sbjct: 84 STVGGRRITVKQAAHR 99
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMA 186
KL + L ++ +++ F A G + + + + TG +GFAF+ F ++ + +
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 187 AGEHTINNKKVD-----PKKA--KARHGKILSEDSAVKSQMMKSETSSVNLE 321
H + + PK A S D + SE SSV+LE
Sbjct: 392 FNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSSVDLE 443
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
LF+G L + +K L D F A+G I S + DP+TG SRGF FI + + E+ D + +
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 190 --GEHTINNK 213
G++ N +
Sbjct: 174 MTGQYLSNRQ 183
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCFITFES 398
F+G L ++ + + + FS FG I ++ D +GF FI+++S
Sbjct: 115 FIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 207 QQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 386
Q +RP+ ST FV GLS + + +R F++FG + + ++ D+ KGF F+
Sbjct: 45 QTPARPQAEPSTNL--FVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 387 TF 392
+
Sbjct: 103 RY 104
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 177
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
+V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 75 YVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 177
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
+V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 YVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +1
Query: 16 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 147
F L + KELR HF GE+ ++V TD TG SRGFA+I
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +3
Query: 195 THHQQQESRPKEG*STTWEDFVGGLSSEISDDEI----RNFFSEFGTILEVEMPFDKTKN 362
T R EG S + +V G SS + +DEI R+ FS+ G + V +P D+
Sbjct: 463 TPRNSNPGRKGEG-SQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETG 521
Query: 363 QRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 497
+GF +I S ++ L+ IGG + V+ + P+ G
Sbjct: 522 ASRGFAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRDSDEG 564
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEM-PFDKTKNQRKGFCFITFESEQVVNDLLKTP 431
F G LS +I+ +I NFF E G +++V + FD KG+ I F S + L+
Sbjct: 387 FAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALEMN 444
Query: 432 KRTIGGKEVDV----KRATPKPDGPG 497
+ + G++V + +R TP+ PG
Sbjct: 445 GKLLLGRDVRLDLANERGTPRNSNPG 470
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQKAL 441
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--FITFESEQVVNDLLKT 428
+V L S+IS EI F FGTI + + F +T+ G C F+ FE V + +K
Sbjct: 260 YVRNLPSDISASEIEEEFKNFGTI-KPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 429 PKRTIGGKEVDVKRATPKPDG 491
+GG++V ++ P P G
Sbjct: 319 SPIYLGGRQVYIEERRPNPAG 339
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--FITFESEQVVNDLLKT 428
+V L S+IS EI F FGTI + + F +T+ G C F+ FE V + +K
Sbjct: 319 YVRNLPSDISASEIEEEFKNFGTI-KPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 429 PKRTIGGKEVDVKRATPKPDG 491
+GG++V ++ P P G
Sbjct: 378 SPIYLGGRQVYIEERRPNPAG 398
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F E+ D A
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNF---ENADDAARAV 86
Query: 193 EHTINNKKVDPKK 231
E ++N K D K+
Sbjct: 87 E-SLNGHKFDDKE 98
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/112 (27%), Positives = 53/112 (47%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V L +D++L++ F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS-- 190
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVNLELS*KWRCPL 348
++ K ++ K + ED V+ Q S+ V ++ S R P+
Sbjct: 191 --QLSGKMIESKPLYVAIAQ-RKEDRRVRLQAQFSQVRPVAMQPSVGPRMPV 239
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 398
+V L+ +DD+++N F E+G I + D + + KGF F+ FE+
Sbjct: 32 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
+V L ISD++++ FS FGT+ ++ D KG F+ F + E+ + +
Sbjct: 135 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLS 193
Query: 432 KRTIGGKEVDVKRATPKPD 488
+ I K + V A K D
Sbjct: 194 GKMIESKPLYVAIAQRKED 212
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-P 431
+VG L ++ + + FSE G ++E + +D+ + +GF F+T +N+ +
Sbjct: 247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306
Query: 432 KRTIGGKEVDVKRATPKPDGPG 497
+ + G+ + V A +P G
Sbjct: 307 GQNLEGRAIRVNVAEERPPRRG 328
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
FVG L+ +++ + F + GT+ E+ +++ +Q +GF F+T S ++ + K
Sbjct: 153 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
Query: 432 KRTIGGKEVDVKRATPKPDGP 494
+ + G+ + V +A P+ P
Sbjct: 213 RYDLNGRLLTVNKAAPRGSRP 233
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMA 186
KLFVG L+++ + L F G +E V + T +SRGF F+ + E+ V
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 187 AGEHTINNKKVDPKKAKAR 243
+ +N + + KA R
Sbjct: 211 FNRYDLNGRLLTVNKAAPR 229
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESI----NVKTDPNTGRSRGFAFIVFKAPESI 171
H +FVG LS E TD L D F A+ S V D TGRSRGF F+ F+ +
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQ-- 204
Query: 172 DKVMAAGEHTINNKKVDPKKAK---ARHGKILSED 267
D A E +N K V ++ + A G ED
Sbjct: 205 DAQTAINE--MNGKWVSSRQIRCNWATKGATFGED 237
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
FVG L ++ + F + GT+ E+ +++ +Q +GF F+T + E+ + K
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Query: 432 KRTIGGKEVDVKRATPKPDGP 494
+ G+ + V RA P+ P
Sbjct: 176 SFEVNGRRLTVNRAAPRGSRP 196
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 186
KLFVG L ++ + L F G +E V + +T +SRGF F+ E +K V
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 187 AGEHTINNKKVDPKKAKAR 243
+N +++ +A R
Sbjct: 174 FNSFEVNGRRLTVNRAAPR 192
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 413
+VG L ++ + FSE G +++ + D+ + +GF F+ +E VN
Sbjct: 210 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +3
Query: 237 STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
S+T + FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + T++E+R +F +G + + + D TG+ +G F+ + + D+ + A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ----VVNDLL 422
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++ ++ L
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLN 272
Query: 423 KTPKRTIGGKEVDVKRATPKPDGPG 497
T + + V+ A PK PG
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPKPG 297
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +3
Query: 237 STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
S+T + FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + T++E+R +F +G + + + D TG+ +G F+ + + D+ + A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ----VVNDLL 422
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++ ++ L
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLN 272
Query: 423 KTPKRTIGGKEVDVKRATPKPDGPG 497
T + + V+ A PK PG
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPKPG 297
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 186
K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++ ++A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 187 AGEHTINNKKVDPKKA 234
+ +K+ KA
Sbjct: 238 LNNSLLEGQKIRVNKA 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTP 431
++G + ++++++ E G + +V++ +DK + + F F T +S + N ++ K
Sbjct: 79 YIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLN 138
Query: 432 KRTIGGKEVDVKRATPKP 485
T+ G+E+ V T KP
Sbjct: 139 GNTVEGREIKV-NITEKP 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTP 431
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V ++
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
Query: 432 KRTIGGKEVDVKRA 473
+ G+++ V +A
Sbjct: 240 NSLLEGQKIRVNKA 253
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
++++G + T+++L +G +E + V D +GRSR F F K+ E + V+
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTP 431
+VG L +S+D++R F FG++ V++P D+T KGF F+ F E N L
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQFARLEDARNALNLNG 346
Query: 432 KRTIGGKEVDVKRATPKPDGPGA 500
+ I G+ + V T + + P A
Sbjct: 347 QLEIAGRAIKVSAVTDQTEVPEA 369
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/51 (45%), Positives = 26/51 (50%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
H +FVG LS E TD L F Y V D TGRSRGF F+ F+
Sbjct: 138 HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 216 SRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 395
S +E S+ + FVG LS E++D + FS + T + + +D+ + +GF F++F
Sbjct: 129 SGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
Query: 396 SEQVVNDLL-KTPKRTIGGKEVDVKRAT 476
++Q + + + +G +++ AT
Sbjct: 189 NQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
++V L E TD EL+ FG YG+I S V D +G SR F F+ F +PE+
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 277
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
F+ L + I + + FS FGTIL ++ D + KG+ F+ FE E+
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+ L+VG L + L D F + ++ V D T RS G+A++ F PE + M
Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 187 A 189
A
Sbjct: 419 A 419
Score = 33.9 bits (74), Expect = 0.091
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACAAL 420
Query: 435 RTI--GGKEVDVKRA 473
I G K + V+RA
Sbjct: 421 NGIKMGDKTLTVRRA 435
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 187 A 189
A
Sbjct: 419 A 419
Score = 33.9 bits (74), Expect = 0.091
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACAAL 420
Query: 435 RTI--GGKEVDVKRA 473
I G K + V+RA
Sbjct: 421 NGIKMGDKTLTVRRA 435
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++ D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 187 A 189
A
Sbjct: 419 A 419
Score = 33.9 bits (74), Expect = 0.091
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL ++ ++R FG + ++ D+ KG+ F ++ + V D+
Sbjct: 362 FVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ-DLSVTDIACAAL 420
Query: 435 RTI--GGKEVDVKRA 473
I G K + V+RA
Sbjct: 421 NGIKMGDKTLTVRRA 435
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 16 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 183
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 44.4 bits (100), Expect = 6e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESI 171
L V +++ TT +L F YG++ + + D TG SRGFAF+ + KA E +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 172 D-KVMAAGEHTINNKKVDPKKAKARHGKIL 258
D +V+ E T+ K P K G+++
Sbjct: 78 DGRVVDGREITVQFAKYGPNAEKISKGRVV 107
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESI 171
L V +++ TT +L F YG++ + + D TG SRGFAF+ + KA E +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 172 D-KVMAAGEHTINNKKVDPKKAKARHGKIL 258
D +V+ E T+ K P K G+++
Sbjct: 78 DGRVVDGREITVQFAKYGPNAEKISKGRVV 107
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 228 EG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 407
+G ST FVGG+ ++ D+++R FS+FG ++ V++P KG F+ F +
Sbjct: 315 DGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKS 368
Query: 408 VNDLLKTPKRTIGGK 452
D +++ T+ GK
Sbjct: 369 AEDAIESLNGTVIGK 383
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 153
+FVG LS + TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 123
+FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/69 (24%), Positives = 39/69 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ + +
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEALQLN 152
Query: 193 EHTINNKKV 219
E ++ +++
Sbjct: 153 ESELHGRQL 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+ +
Sbjct: 95 FVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNE 153
Query: 435 RTIGGKEVDV 464
+ G+++ V
Sbjct: 154 SELHGRQLKV 163
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 16 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 195
F+ LS + ++++R FG G ++SI + +TG+ RG A+ F E + +A
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 196 HTINNKKVDPKKAKARHGK 252
KK+ ++ + GK
Sbjct: 714 KMFFGKKISIARSNPKKGK 732
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/76 (21%), Positives = 38/76 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+ LS + +++IR FF + G + + + K + +G + F ++ + + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 435 RTIGGKEVDVKRATPK 482
+ GK++ + R+ PK
Sbjct: 714 KMFFGKKISIARSNPK 729
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 16 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 195
F+ LS + ++++R FG G ++SI + +TG+ RG A+ F E + +A
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 196 HTINNKKVDPKKAKARHGK 252
KK+ ++ + GK
Sbjct: 714 KMFFGKKISIARSNPKKGK 732
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/76 (21%), Positives = 38/76 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F+ LS + +++IR FF + G + + + K + +G + F ++ + + +
Sbjct: 654 FISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNR 713
Query: 435 RTIGGKEVDVKRATPK 482
+ GK++ + R+ PK
Sbjct: 714 KMFFGKKISIARSNPK 729
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/80 (18%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 186
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 187 AGEHTINNKKVDPKKAKARH 246
K++ +A+H
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH 172
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 249 EDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 428
E ++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + + + T
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 429 PKRT-IGGKEV 458
T GK +
Sbjct: 153 LNNTDFRGKRI 163
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 153
+LF+G + + +++ G ++ + + +P N GR+RGFAFI +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 193 EHTI 204
H++
Sbjct: 126 HHSL 129
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 228 EG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 407
EG + FVGGL S ++D++++ FSEFG I+ V++P KG F+ F +
Sbjct: 300 EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPN 353
Query: 408 VNDLLKTPKRTIGGKE 455
+ L+ T+ GK+
Sbjct: 354 AEEALEKLNGTVIGKQ 369
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKV 180
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKL 361
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 401
FVG L+ ++SD + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 202 FVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 251
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+ V G+ ET ++++ + FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 246 WEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
W V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 95 WIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 153
+FVG L+ E TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMP 344
FVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 263 FVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 159
+FVGGL TD EL+ FG +GE+ ++VK P G+ GF KA
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFVQYANKA 306
Score = 33.9 bits (74), Expect = 0.091
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 401
FVG L+ E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/69 (23%), Positives = 39/69 (56%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
++VG + + T +E++ HF + G + + + TD G+ +GFA++ F E++ +
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 193 EHTINNKKV 219
E ++ +++
Sbjct: 164 ESELHGRQI 172
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG + + +E++ F GT+ V + DK Q KGF ++ F + V + L +
Sbjct: 106 YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLILNE 164
Query: 435 RTIGGKEVDV 464
+ G+++ V
Sbjct: 165 SELHGRQIKV 174
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/50 (32%), Positives = 35/50 (70%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
++ LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI +
Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 186
++FVG L ++++L+ FG GE+ + + +P T +S+G AF+ F E + V
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 187 AGEHTINNKK 216
IN KK
Sbjct: 275 LKSPMINGKK 284
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V A
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSCA- 449
Query: 193 EHTINNKKVDPKKAKAR 243
INN ++ + KA+
Sbjct: 450 -KFINNSELGEGEDKAK 465
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA 159
++ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F +
Sbjct: 293 NDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 180
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-P 431
+V ++ ++++E+R FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 307 YVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 432 KRTIGGKEVDVKRATPKPD 488
+ GK + V A K D
Sbjct: 366 GQMFHGKPLYVAIAQKKED 384
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
++ L +++S+D +R F+EFG I+ + + D+ + R G+ F+ F++ + +T
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPEDARRAAETVN 262
Query: 435 RT-IGGKEVDVKRATPKPD 488
T G K + V RA K +
Sbjct: 263 GTKFGSKCLYVGRAQKKAE 281
Score = 36.3 bits (80), Expect = 0.017
Identities = 32/103 (31%), Positives = 49/103 (47%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FV L T+ L+D F +G I S V T + G+SRG+ F+ F E D AA
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQF---EQEDAAHAAI 169
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVNLE 321
+ T+N+ V K+ GK + + VK + + NL+
Sbjct: 170 Q-TLNSTIVADKEIYV--GKFMKKTDRVKPEEKYTNLYMKNLD 209
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 193 EHTINNKKV 219
+++ N K+
Sbjct: 86 NNSLLNGKM 94
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTP 431
+VG L +++ + + F+EF ++ V + D + + + + F S Q N + K
Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86
Query: 432 KRTIGGKEVDVKRATPKPD 488
+ GK + V + PD
Sbjct: 87 NSLLNGKMIRVMWSVRAPD 105
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +1
Query: 7 EKLFVGG----LSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
+K+FV G LS + LR+HF + GEI++++V D +TG S+G A++ F
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 216 SRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 395
S P G S T F LS I ++ NFF E G +++V ++ +GF + F
Sbjct: 289 STPAAGGSKTL--FAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFA 346
Query: 396 SEQVVNDLLKTPKRTIGGKEV 458
S + L+ R + G+E+
Sbjct: 347 SSEEAQKALEFHGRPLLGREI 367
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
FV G + +S+D+I+N FS G I V +P D+ KG ++ F SE L
Sbjct: 404 FVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF-SEGKEKALE 462
Query: 423 KTPKRTIGGKEVDVKRATPKPDGPG 497
GG + V P+ D G
Sbjct: 463 LNGSDMGGGFYLVVDEPRPRGDSSG 487
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
LF LS+ ++ + F GE+ + T+ + G RGF + F + E K +
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
R L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S
Sbjct: 19 RFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNA 78
Query: 181 MAAGEHT 201
M H+
Sbjct: 79 MTRLNHS 85
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
++V L TD L F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTP 431
+V L ++DD + FS++GT+ V + D R GF F+ F E +
Sbjct: 205 YVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR-GFGFVNFCNPENAKKAMESLC 263
Query: 432 KRTIGGKEVDVKRATPKPD 488
+G K++ V +A K +
Sbjct: 264 GLQLGSKKLFVGKALKKDE 282
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 193 E 195
E
Sbjct: 71 E 71
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FVGGL S ++D++++ F+EFG I+ V++P KG F+ F + + L+
Sbjct: 307 FVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLN 360
Query: 435 RTIGGKE 455
T+ GK+
Sbjct: 361 GTVIGKQ 367
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKV 180
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKL 359
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 401
FVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESIDK 177
++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + DK
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 178 VM 183
V+
Sbjct: 160 VL 161
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTP 431
+VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF E E +
Sbjct: 16 YVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMD 75
Query: 432 KRTIGGKEVDVKRATPK 482
+ G+ + V A P+
Sbjct: 76 GAELYGRVLTVNYALPE 92
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
++VG + + T +E++ HF G + + + D G+ +GFA++ F E++ + +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 193 EHTINNK--KVDPKK 231
E ++ + KV PK+
Sbjct: 150 ESELHGRQLKVSPKR 164
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+ +
Sbjct: 92 YVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNE 150
Query: 435 RTIGGKEVDV 464
+ G+++ V
Sbjct: 151 SELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
++VG + + T +E++ HF G + + + D G+ +GFA++ F E++ + +
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 193 EHTINNK--KVDPKK 231
E ++ + KV PK+
Sbjct: 150 ESELHGRQLKVSPKR 164
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+ +
Sbjct: 92 YVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNE 150
Query: 435 RTIGGKEVDV 464
+ G+++ V
Sbjct: 151 SELHGRQLKV 160
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 198
V GLS ++T+++L +G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 193 EHTI---NNKKVDPKKAKARHG 249
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
V GLS + +++++ +E+G + V + ++ +GF FI F + ++
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 5e-04
Identities = 29/120 (24%), Positives = 53/120 (44%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVNLELS*KWRCPLTKQRTKER 372
+ I N + A +G+ SE + KS E + CP + +ER
Sbjct: 119 DAKILNGRKLTVSIAADNGR-ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/91 (27%), Positives = 45/91 (49%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VGGL+ ++++RD F A+GEIESI + D + AF+ + + E +K A
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREGAEK---AA 280
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQ 285
+ N ++ ++ K G+ + Q
Sbjct: 281 QELSNRLVINGQRLKLTWGRPKPDQDGANQQ 311
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 162
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 237 FVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L+VGGL+ ++++RD F A+GEIESI + + + AF+ + E +K A
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KACAFVTYTTREGAEK---AA 280
Query: 193 EHTINNKKVDPKKAKARHGK 252
E N V+ ++ K G+
Sbjct: 281 EELSNRLVVNGQRLKLTWGR 300
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 353
FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 123
+FVGGL TD L++ F YGEI + + G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L++G L + + L F GE+ S V + TG+ G+ FI F + + ++V+
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL--- 120
Query: 193 EHTINNKKV 219
T NN +
Sbjct: 121 -QTFNNAPI 128
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 353
FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 123
+FVGGL TD L++ F YGEI + + G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L++G L + + L F GE+ S V + TG+ G+ FI F + + ++V+
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVL--- 120
Query: 193 EHTINNKKV 219
T NN +
Sbjct: 121 -QTFNNAPI 128
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 37 YIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYIS 96
Query: 435 RTI 443
TI
Sbjct: 97 GTI 99
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/57 (24%), Positives = 34/57 (59%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 425
++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 10 YIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
+FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
++ L +++S++ + FS+FG ++ + D + + +GF FI FES + +L
Sbjct: 20 YIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 432 KRTIGGKEVDVKRATPKPDG 491
R IG K + V+R DG
Sbjct: 79 GRLIGQKILCVQRTPKVEDG 98
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L++ L + +++ L F +G++ +V G SRGFAFI F++ +S + M
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 193 EHTINNKKV 219
+ + +K+
Sbjct: 78 DGRLIGQKI 86
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
+FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 401
FVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESIDK 177
++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + DK
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 178 VM 183
V+
Sbjct: 160 VL 161
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 153
+FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 228 EG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 407
+G S FVGGL ++++++++ FS+FG ++ V++P KG F+ F + Q
Sbjct: 321 DGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQS 374
Query: 408 VNDLLKTPKRTIGGK 452
+ + T+ GK
Sbjct: 375 AEEAIGNLNGTVIGK 389
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
+FVGGL + T+++L F +GE+ S+ + +G F+ F +S ++ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNL 382
Query: 193 EHTINNK 213
T+ K
Sbjct: 383 NGTVIGK 389
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 207 QQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 386
++E+R K + + FVG + +S+ ++ F EF + EV + DK +G CF+
Sbjct: 5 KEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Query: 387 TFESEQVVNDLLKT--PKRTIGG 449
S + + L+ K+T+ G
Sbjct: 65 LCPSREEADKLVNACHNKKTLPG 87
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK++ A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 190 GEHTINNKKVDP 225
+NKK P
Sbjct: 79 ----CHNKKTLP 86
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVN 413
FVG L +S+ E+++ FS++GTI ++++ + KG F+ +E+ EQ V+
Sbjct: 109 FVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 190 --GEHTINNKKV 219
G+H + V
Sbjct: 166 INGKHKMEGSTV 177
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 207 QQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 386
++E+R K + + FVG + +S+ ++ F EF + EV + DK +G CF+
Sbjct: 5 KEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Query: 387 TFESEQVVNDLLKT--PKRTIGG 449
S + + L+ K+T+ G
Sbjct: 65 LCPSREEADKLVNACHNKKTLPG 87
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK++ A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 190 GEHTINNKKVDP 225
+NKK P
Sbjct: 79 ----CHNKKTLP 86
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVN 413
FVG L +S+ E+++ FS++GTI ++++ + KG F+ +E+ EQ V+
Sbjct: 109 FVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 186
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 187 AGEHTINNKKVDPKKAKARHGKILSEDSAV 276
G H K K + +G+ S S +
Sbjct: 411 NGRHLGGKKLKVQLKRDSNNGQPSSNPSLI 440
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMES 165
Query: 190 --GEHTINNKKV 219
G+H + V
Sbjct: 166 INGKHKMEGSTV 177
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
F+ L + I + + FS FGTIL ++ D T + KG+ F+ FE E+
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEKEE 187
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTP 431
+V L EI +DE+R F +FG I + D++ N R F F+ FE +E + + K
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR-CFGFVNFECTEAAASAVEKMN 290
Query: 432 KRTIGGKEVDVKRATPKPD 488
++G + V RA K +
Sbjct: 291 GISLGDDVLYVGRAQKKSE 309
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEES 188
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 205 FVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 159 PRVNRQGHGCW*THHQQQESRPKEG*STTWED---FVGGLSSEISDDEIRNFFSEFGTIL 329
P N G+G + H S P + S +++ ++G L + DD + N FS FG I+
Sbjct: 450 PWANNAGNGA--SAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIV 507
Query: 330 EVEMPFDKTKNQRKGFCFITFESEQVVN 413
++ D+ KG+ F+ + Q+ N
Sbjct: 508 MAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
L++G L D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 159 PRVNRQGHGCW*THHQQQESRPKEG*STTWED---FVGGLSSEISDDEIRNFFSEFGTIL 329
P N G+G + H S P + S +++ ++G L + DD + N FS FG I+
Sbjct: 450 PWANNAGNGA--SAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIV 507
Query: 330 EVEMPFDKTKNQRKGFCFITFESEQVVN 413
++ D+ KG+ F+ + Q+ N
Sbjct: 508 MAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
L++G L D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTD 111
L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPES 168
+FVG L+ + TD L + F A Y ++ V D TGRS+G+ F+ F A ES
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF-ADES 226
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 156 GPRVNRQGHGCW*THHQQQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEV 335
GP N++ +Q + E T FVG + +++D++++ F +FG ++ V
Sbjct: 248 GPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV 307
Query: 336 EMPFDK 353
++P K
Sbjct: 308 KIPAGK 313
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 213 ESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFIT 389
E R EG T FVG L+ +++D + F + ++ ++ D+T + KG+ F+
Sbjct: 164 ERRQAEGPEHTV--FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVR 221
Query: 390 F--ESEQV 407
F ESEQ+
Sbjct: 222 FADESEQI 229
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 123
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PK 434
V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+ ++T +
Sbjct: 44 VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDR 103
Query: 435 RTIGGKEVDVKRATP 479
R G+ + + A P
Sbjct: 104 RMYNGRMIYIDIAKP 118
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 407
++G + + EI FFS+FGT+ V + +K + K F FI FE +V
Sbjct: 63 YIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L++G + + E+ F +G ++ + V + TG+S+ F FI F+ PE + +AAG
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAG 119
Query: 193 --------EHTINNKKVDPKKAK 237
EH + ++P+ K
Sbjct: 120 AMNDYLLMEHMLKVHVIEPENVK 142
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 264 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RT 440
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 441 IGGKEVDVKRA 473
+ G+ + V+ A
Sbjct: 132 VNGRLIFVETA 142
Score = 35.1 bits (77), Expect = 0.039
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 25 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 204
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 205 NNKKV 219
N ++
Sbjct: 132 VNGRL 136
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
H L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 288 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDV 464
+E+R F FG + +V +P D Q +GF F+ F + ++ +R+ G+E+ V
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120
Query: 465 KRATPKPDGP 494
A+ P
Sbjct: 121 VVASESRKRP 130
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
V LS +T + +L + F +G + + V D TG SRGF F+ F + E + +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPK 434
V LS + + ++ F FG + V + D+ +GF F+ F S E + K
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 435 RTIGGKEVDVKRATPKP 485
+ V+ ATP+P
Sbjct: 277 YGYDNLILRVEWATPRP 293
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KL+V +S T+ ++R F YG + I + D TG + FI +K E + +AA
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Score = 35.1 bits (77), Expect = 0.039
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
KL+V L+ +TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
FVG L +S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 112 FVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVN 315
+T+N ++ KK K + L D+ + Q +S+ N
Sbjct: 398 -NTMNGCQLSGKKLKVQ----LKRDNGQQQQQQQSKNPLFN 433
Score = 34.7 bits (76), Expect = 0.052
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + T+ +L F + + +N+ + T RG F+ E DKV+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI-- 70
Query: 190 GEHTINNKKVDP 225
++ +NKK P
Sbjct: 71 --NSFHNKKTLP 80
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-- 428
FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 15 FVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSFH 74
Query: 429 PKRTIGG 449
K+T+ G
Sbjct: 75 NKKTLPG 81
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M A
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEA 168
Query: 190 --GEHTINNKKV 219
G H + V
Sbjct: 169 LNGRHIMEGANV 180
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
FVG L +S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 103 FVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 193 EHTINNKKVDPKKAKARHGKILSEDSAVKSQMMKSETSSVN 315
+T+N ++ KK K + L D+ + Q +S+ N
Sbjct: 389 -NTMNGCQLSGKKLKVQ----LKRDNGQQQQQQQSKNPLFN 424
Score = 34.7 bits (76), Expect = 0.052
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG + T+ +L F + + +N+ + T RG F+ E DKV+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI-- 70
Query: 190 GEHTINNKKVDP 225
++ +NKK P
Sbjct: 71 --NSFHNKKTLP 80
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-- 428
FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 15 FVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSFH 74
Query: 429 PKRTIGG 449
K+T+ G
Sbjct: 75 NKKTLPG 81
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M A
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEA 159
Query: 190 --GEHTINNKKV 219
G H + V
Sbjct: 160 LNGRHIMEGANV 171
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L + L + +LRD F +G ++ I + + TG RGF F+ ++ E + M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 193 EHTI 204
H +
Sbjct: 109 NHKV 112
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPK 434
+ L + +++R+ F FG + ++ +P + + +GF F+ + +E + +
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNH 110
Query: 435 RTIGGKEVDV 464
+ IGG+E+ +
Sbjct: 111 KVIGGREIAI 120
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
+F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E+ + V
Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLV 344
Query: 181 MAAGEHTINNKKVDPKKAK 237
+ G + +++ + K
Sbjct: 345 LKKGYLKLRERELRISRVK 363
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDP--NTGRSRGFAFIVFKAPESIDKVMA 186
+FVG L + K + F +GE+ES+ +++ P ++ R+R A ++ + E V A
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHA 232
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 36.3 bits (80), Expect = 0.017
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
+LF G L E D L F + V D TG+++G+ F+ F P +AA
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPAD----LAA 193
Query: 190 GEHTINNKKVDPKKAKAR 243
+N K V + K R
Sbjct: 194 ALKEMNGKYVGNRPIKLR 211
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
F G L +E++DD + F+ F T ++ DK + KG+ F++F + + LK
Sbjct: 140 FCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199
Query: 435 -RTIGGKEVDVKRATPK 482
+ +G + + +++++ K
Sbjct: 200 GKYVGNRPIKLRKSSWK 216
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
KLFV L W + ++ + FG G + ++ + + G++RGFAF+ + E
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGE 146
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
RH KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F E +
Sbjct: 193 RH-KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAE 250
Query: 175 KVM 183
+
Sbjct: 251 NAI 253
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSAD 61
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 273 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 33.9 bits (74), Expect = 0.091
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 43 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKV 219
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +V
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 220 DPKKAKARHGKILSE 264
K K + G+IL +
Sbjct: 387 LVKPYKEK-GRILEK 400
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 7 EKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
E LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F + + K +
Sbjct: 244 EVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASADETKKAL 301
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 1 RHEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
R + LFV L +ET + D F GE+ + + + G+ G F+ F + ++
Sbjct: 125 REKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEA 183
Query: 181 MAA--GEHTINNK 213
+ GE NNK
Sbjct: 184 LQKKNGECLDNNK 196
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.039
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 RHEK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
RH++ + V LS +T +L + F +G + +V D T SRGF F+ F + E
Sbjct: 170 RHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQ 229
Query: 175 KVM 183
+ +
Sbjct: 230 RAI 232
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
V LS + ++ F FG + + D+ + +GF F++F S +
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSRE 226
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 162
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.1 bits (77), Expect = 0.039
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTP 431
+V L + + ++ FSEFGTI ++ + KG F+ F SE+ +LK
Sbjct: 226 YVKNLDDSVDNTKLEELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 432 KRTIGGKEVDVKRATPK 482
+ +G K + V A K
Sbjct: 285 GKMVGNKPIYVSLAQCK 301
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.1 bits (77), Expect = 0.039
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 193 EHTINNKKVDPKKAKA 240
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 193 EHTINNKKVDPKKAKA 240
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.069
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 222
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 223 PKKAKARHGKI 255
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.069
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 16 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 195
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 196 HTI 204
H +
Sbjct: 299 HDV 301
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.9 bits (74), Expect = 0.091
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 46 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 222
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 223 PKKAKARHGKILSE 264
K K + GK+L +
Sbjct: 329 VKPYKEK-GKVLDK 341
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 273 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 422
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 195 THHQQQESRPKEG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK- 371
T + QQE R +EG + FVG L + I E FF +FG I V + + ++
Sbjct: 154 TRNPQQEFR-QEG-----KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
Query: 372 GFCFITFESEQ 404
GF FI + +E+
Sbjct: 208 GFGFIIYAAEK 218
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 33.9 bits (74), Expect = 0.091
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 46 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 222
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 223 PKKAKARHGKILSEDSAVKSQMMKSETSSVNLELS 327
K K + GK+ D +Q + E S L+ S
Sbjct: 328 VKPYKEK-GKV--PDKYRTNQTTERELSPTGLDSS 359
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 79 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 186
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 31 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 270 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLKTPKRTIG 446
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK-QNLVFA 182
Query: 447 GKEVDVK 467
G+E+++K
Sbjct: 183 GQELELK 189
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KL++ L + ++++++ F GE++ V D +GRS+G A +V+
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KL++ L + ++++++ F GE++ V D +GRS+G A +V+
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 153
KL++ L + ++++++ F GE++ V D +GRS+G A +V+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVY 135
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 425
+VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 5 YVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 425
VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 14 VGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
+L+VG LS T ++L F YG + +++K D +AF+ F P D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDAD 58
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 186
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 186
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 5 YVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRTD 56
Query: 435 RTIGG 449
T G
Sbjct: 57 NTTFG 61
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 219
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 220 D 222
D
Sbjct: 156 D 156
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 246 FVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/67 (23%), Positives = 37/67 (55%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 198
VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 10 VGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVLLSGA 63
Query: 199 TINNKKV 219
+I ++ V
Sbjct: 64 SIADQSV 70
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.64
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 193 EHTINNKKVDPKKAKARHGK 252
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 10 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 174
+L+VG LS T ++L F YG + +++K D +AF+ F P D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDAD 58
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.85
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 347
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 46 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 226 KKAKARHGKILSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 360
K+ K + G+ +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 558 KELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 392
V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 431
++G +++ + +D + + G + D T + KGF F FES E ++ +
Sbjct: 207 YIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLT 265
Query: 432 KRTIGGKE--VDVKRAT 476
+RTI G+E V+V +AT
Sbjct: 266 QRTIDGQELLVNVNQAT 282
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/81 (23%), Positives = 31/81 (38%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 296 YVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEASP 355
Query: 435 RTIGGKEVDVKRATPKPDGPG 497
TIG ++ V+ G G
Sbjct: 356 VTIGDRQAVVEEKKTNSRGGG 376
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 156
+FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 201
T + ++ HF YG++ ++ ++ R F+F+ F+ E K + A + +
Sbjct: 105 TKEHDIEKHFEPYGKVTNVRIR--------RNFSFVQFETQEDATKALEATQRS 150
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF--ITFESEQVVNDLLKT 428
+V L + + ++ F FG I + + ++ ++GFCF + FE+ L+
Sbjct: 296 YVRNLPFDSTPTQLEEVFKNFGAIKHEGI---QVRSNKQGFCFGFVEFETSSGKQSALEA 352
Query: 429 PKRTIGGKEVDVKRATPKPDGPG 497
TIG ++ V+ G G
Sbjct: 353 SPVTIGDRQAVVEEKKTNSRGGG 375
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 434
FV L + + +++ F FG I + + + + F F+TF S + V +L+ K
Sbjct: 280 FVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAHK 339
Query: 435 RT---IGGKEVDVK 467
+ IG + V ++
Sbjct: 340 ESAIRIGNRRVSIE 353
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 201
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 68 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 201
T ++L HF YG+I ++ ++ R FAFI ++A E + + A ++
Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 189
++VG L + + E+ D F YG I I +K P R + F+ F+ + ++ D +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAIKGR 65
Query: 190 GEHTINNKKVDPKKAKARHGKILSE 264
+ ++ ++ + A G+ S+
Sbjct: 66 DGYNLDGCRLRVELAHGGRGQSSSD 90
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 165
L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LFV ++ D EL F +GEI S+ +SRGF I + + M A
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHAAMRAL 241
Query: 193 EHTINNKK 216
++T+ K+
Sbjct: 242 QNTLLRKR 249
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 13 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 192
LFV ++ D EL F +GEI S+ +SRGF I + + M A
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHAAMRAL 254
Query: 193 EHTINNKK 216
++T+ K+
Sbjct: 255 QNTLLRKR 262
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 55 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 183
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 55 LRDHFGAYGEIESINVKTDPNTGRSRGF 138
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 189
T ++L HF YG+I ++ ++ R FAFI ++A E + + A
Sbjct: 108 TRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDA 149
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 228 EG*STTWEDFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 371
+G T +VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 173 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 55 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 219
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +1
Query: 13 LFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 180
LFV G E++ +HF + G++ I V +TG S G+AFI K +
Sbjct: 119 LFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NETKGL 176
Query: 181 MAAGEHTINNKKVD 222
G H + +K+D
Sbjct: 177 TLNGSH-LGGRKID 189
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +3
Query: 255 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--FITFESEQVVNDLLKT 428
FV L ++ F +FG I E + ++ C FI+FE+ V +L+
Sbjct: 283 FVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSVLQA 342
Query: 429 PKRT---IGGKEVDVKRATPKPDG 491
K T + +++ VK DG
Sbjct: 343 AKNTPFMLADRKLRVKEKEVDYDG 366
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+ +S +S +++ FFS G I VEM +++ Q ++TF+ Q
Sbjct: 33 ISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQVAYVTFKDSQ 78
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+ +S +S +++ FFS G I VEM +++ Q ++TF+ Q
Sbjct: 34 ISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQVAYVTFKDSQ 79
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 258 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 404
+ +S +S +++ FFS G I VEM +++ Q ++TF+ Q
Sbjct: 33 ISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQVAYVTFKDSQ 78
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 362 VLCFVKGHLHF*DSSKFTEEVSDFII*DFTAESSDKIFPCRALAFFGST 216
+L + +GH S + EE +++ D+ A+ S+ FP R A+ S+
Sbjct: 83 ILHWRRGHKEECRSPDYDEEKEEYVQSDYDAKESNVDFPSRGTAYESSS 131
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 294 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 404
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 78 VKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 294 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 404
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 79 VKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQ 117
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 19 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 198
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 199 TINNKKV 219
TI + V
Sbjct: 65 TIVDSSV 71
>At3g62490.1 68416.m07021 expressed protein hypothetical proteins -
Arabidopsis thaliana
Length = 559
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 175 KVMAAGEHTINNKKVDPKKAKARHGKILSEDSAVK--SQMMKSETSSVNLEL 324
K+ A +N+K +AKA + K + E +A++ +++ K+E SS+N E+
Sbjct: 380 KLKLADREAFDNRKKCADQAKAIYAKDMKEMAALRDAAEIHKAEMSSLNNEV 431
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 4 HEKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 132
++ LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 40 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 219
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 220 D 222
D
Sbjct: 130 D 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,353
Number of Sequences: 28952
Number of extensions: 240278
Number of successful extensions: 1282
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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